Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0309 ATGCGAACCCTTTGCGACGTATGCGAGAGCGCCGCTGCCATTGTCTTCTGCGCCGCTGATGAGGCTGCTCTCTGCTCCGCTTGTGACCACAAGATCCATATGTGTAACAAACTTGCTAGTAGACACGTTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAACGCACCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACTCATGGAAGATATCTTCTATTGAGGCAAAGAGTTCAGTTTCCATGTGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCTATGGATCAAAATGAATCAAGGAGGGATGAAAGTCAGTCACTCAAGCTAAAAATAAGAGATAGTCAGCAGAATCACAGTGTCTCACCTGTTCCAAGACAAGAAAATAATATTGATGGTCATGGAAAAATGGATAAAAAGTTAATTGATCTTAATACGAGGCCACTGCGGTTAAATGGAGCAGCACCAAACAACCAGGAACGAGGTATGGATATTTTAAGAGGCAATAATCATAAATCTGCGAGTGTGCCACCAGTAGAATCCTTCAAACAAGAGTCTGAGAAGTAA 639 0.4366 MRTLCDVCESAAAIVFCAADEAALCSACDHKIHMCNKLASRHVRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVQFPCDKPAQMEELGLQPMDQNESRRDESQSLKLKIRDSQQNHSVSPVPRQENNIDGHGKMDKKLIDLNTRPLRLNGAAPNNQERGMDILRGNNHKSASVPPVESFKQESEK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0309 212 CDD Bbox1_BBX-like 4 47 - -
Gso12g0309 212 MobiDBLite consensus disorder prediction 136 212 - -
Gso12g0309 212 MobiDBLite consensus disorder prediction 155 169 - -
Gso12g0309 212 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Gso12g0309 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gso12g0309 212 SMART bboxneu5 51 96 IPR000315 GO:0008270
Gso12g0309 212 MobiDBLite consensus disorder prediction 136 151 - -
Gso12g0309 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso12g0309 212 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 212 - -
Gso12g0309 212 CDD Bbox1_BBX-like 56 96 - -
Gso12g0309 212 Gene3D Classic Zinc Finger 2 92 - -
Gso12g0309 212 Pfam B-box zinc finger 53 90 IPR000315 GO:0008270
Gso12g0309 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0309 Gso-Chr12 2723869 2727341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0309 1 212 C2C2-CO-like Transcription Factor Family AT4G38960 57.547 4.16e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso12g0309 zf-B_box 6.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0309 - - gmx:100818604 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0309 12 2723869 2727341 Gso11g0948 11 8513637 8516264 GST