Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0305 ATGGAAATGGTTCCTTCCCCTCCACACTGTACGGTAACAGAGATCGGAACGTGGAACTGCGGAAACCGGAATATCTCACTTCTCAGATCAGATCAATCCGACGTCGTTGCAGTTATAATGGCTCCATTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGTCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCTCTTGCCCTGTATGGACTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA 612 0.4918 MEMVPSPPHCTVTEIGTWNCGNRNISLLRSDQSDVVAVIMAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0305 203 SUPERFAMILY F1F0 ATP synthase subunit C 52 115 IPR035921 -
Gso12g0305 203 Pfam ATP synthase subunit C 55 114 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gso12g0305 203 Pfam ATP synthase subunit C 135 193 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gso12g0305 203 CDD ATP-synt_Vo_c_ATP6C_rpt2 127 194 - -
Gso12g0305 203 SUPERFAMILY F1F0 ATP synthase subunit C 125 194 IPR035921 -
Gso12g0305 203 Gene3D - 49 200 IPR035921 -
Gso12g0305 203 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 42 203 - -
Gso12g0305 203 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 51 159 IPR011555 GO:0033179|GO:0046961|GO:1902600
Gso12g0305 203 PRINTS Vacuolar ATP synthase 16kDa subunit signature 68 92 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso12g0305 203 PRINTS Vacuolar ATP synthase 16kDa subunit signature 94 118 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso12g0305 203 PRINTS Vacuolar ATP synthase 16kDa subunit signature 145 171 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso12g0305 203 PRINTS Vacuolar ATP synthase 16kDa subunit signature 172 195 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso12g0305 203 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 42 203 - -
Gso12g0305 203 CDD ATP-synt_Vo_c_ATP6C_rpt1 51 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0305 Gso-Chr12 2692924 2694702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0305 40 203 Primary Pumps ATPases(2) AT2G16510 98.171 2.00e-110 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0305 K02155 - gmx:100812380 369.007