Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0301 ATGGCCGCAGCAGCAGCAGCAACCACTCTCTCCTCTTCCCTTTCCAAACCCTCCTCTCTTACTTTCCAAACCCACTCTTTCCCCATAACCCTACCCACTCCCCCTCGCGCCGCCGCCAAACCCCCTCTTCTCGTCTTCTCCAAAAACCCAATTTCCGACATCGTCTCCTCCACCTTCTCACGCGCCGAAGAAGGCGCGTGGGACGACGAGAAGCCGCGCGAGGAGTGCGGCGTGGTCGGCATATACGGCGACCCTGAGGCCTCGCGCCTCTGCTACCTTGCCCTCCACGCGCTCCAGCATCGCGGCCAAGAAGGCGCCGGAATCGTCACCGTCAACAACAACGTCCTCCAATCCATCACCGGCGTTGGCCTCGTCTCCGAAGTCTTCAACCAATCAAAACTCGACCAGCTCCCCGGCAGCCTCTCCATCGGCCACGTCCGCTACTCCACCGCCGGCCAATCCATGCTCAAAAACGTCCAGCCCTTTGTCGCCGGTTACCGCTTCGGCTCCGTCGGCGTGGCCCACAACGGCAACCTCGTCAACTATAAGACCCTCCGAACCAACCTCGAAGACAACGGCTCCATCTTCAACACCACCTCTGACACCGAGGTTGTCCTCCACCTCATCGCCACCTCCAAACACAGACCCTTCATTCTTCGAATCGTTGACGCCTGTGAAAAGCTCGAAGGGGCTTATTCTATTGTTTTCGTCACCGAGGACAAGCTTGTCGCCGTTCGAGACCCTTTCGGGTTTAGGCCTTTGGTTATGGGGAGAAGGAGCAACGGTGCTGTTGTTTTCGCTTCTGAAACCTGCGCGCTTGACCTAATTGAAGCGACTTATGAAAGGGAGGTTTACCCTGGTGAGGTTCTTGTGGTGGATAAAAACGGTATTCAGAGTCTCTGCCTCATGTCTCATCCTCAACCAAAACAATGCATTTTTGAACATATTTACTTTGCACTTCCCAATTCGGTTGTTTTTGGGAGGTCTGTGTATGAGTCTCGTAGACAATTTGGGGAGATTTTGGCTACTGAAAGTCCTGTGGAGTGTGATGTTGTGATTGCTGTGCCTGACTCTGGTGTTGTGGCTGCGCTTGGTTATGCTGCGAAAGCTGGGGTTCCGTTTCAGCAGGGTTTGATTAGGTCGCACTATGTGGGGAGGACTTTCATTGAGCCCTCTCAGAAGATTAGGGACTTTGGTGTGAAGCTGAAGCTATCACCTGTTCGTGCTGTGCTTGAAGGTAAACGTGTTGTGGTTGTGGATGATTCCATTGTGAGAGGAACCACCTCGTCCAAGATTGTTAGGCTGTTGAAGGAGGCTGGTGCTAAGGAGGTTCACATGAGGATTGCGAGTCCTCCGATTATTGGTTCTTGTTACTATGGTGTGGATACTCCTAGCTCTGAGGAGTTGATTTCGAATAGGATGAGTGTGGAGGAGATAAGGGACTTTATTGGGTCGGATTCACTTGCCTTTTTGCCTTTTGATAGCTTGAAGAGGTTGTTGGGAAGTGAAAGTCCAAATTTTTGTTATGCTTGTTTCTCTGGGAATTACCCTGTGGAGCCAAGAGAGCTTAAAGTGAAGAGGGTTGGGGACTTTGTTGATGATGGCTTGAATGGAAGCTTGGAGTCTATTGATGGTGGTTGGGTTCAGGCAAACCGAAATCAAATCAAGGTTGGTACTGGTACTAGTACTAGTATTTCATAA 1701 0.5162 MAAAAAATTLSSSLSKPSSLTFQTHSFPITLPTPPRAAAKPPLLVFSKNPISDIVSSTFSRAEEGAWDDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVTVNNNVLQSITGVGLVSEVFNQSKLDQLPGSLSIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNLVNYKTLRTNLEDNGSIFNTTSDTEVVLHLIATSKHRPFILRIVDACEKLEGAYSIVFVTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVYPGEVLVVDKNGIQSLCLMSHPQPKQCIFEHIYFALPNSVVFGRSVYESRRQFGEILATESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVEEIRDFIGSDSLAFLPFDSLKRLLGSESPNFCYACFSGNYPVEPRELKVKRVGDFVDDGLNGSLESIDGGWVQANRNQIKVGTGTSTSIS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0301 566 Pfam Glutamine amidotransferase domain 154 273 IPR017932 -
Gso12g0301 566 Pfam Phosphoribosyl transferase domain 347 445 IPR000836 -
Gso12g0301 566 TIGRFAM purF: amidophosphoribosyltransferase 76 517 IPR005854 GO:0004044|GO:0009113
Gso12g0301 566 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 76 299 IPR029055 -
Gso12g0301 566 SUPERFAMILY PRTase-like 311 522 IPR029057 -
Gso12g0301 566 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 76 517 IPR029055 -
Gso12g0301 566 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 52 548 - -
Gso12g0301 566 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 76 295 IPR017932 -
Gso12g0301 566 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 52 548 - -
Gso12g0301 566 CDD PRTases_typeI 338 449 IPR000836 -
Gso12g0301 566 Hamap Amidophosphoribosyltransferase [purF]. 75 516 IPR005854 GO:0004044|GO:0009113
Gso12g0301 566 Gene3D - 335 499 IPR029057 -
Gso12g0301 566 CDD GPATase_N 76 326 IPR035584 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0301 Gso-Chr12 2667308 2669422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0301 68 549 PRT Gene Family AT2G16570 86.570 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0301 K00764 - gmx:100801720 1099.73