Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0280 ATGGATGACGGCGAGCTTGATTTCTCCAACCATGAAGTGTTTTCGAGTCCCAACATGGGTGAGCTTCCCAGCAGCGGTTCAATGGACAGTTTCTTCGACGAGCTTCTCAAGGACACGCACGCCTGCACCCACACCCACACGTGTAACCCTCCCGGCCCCGATTTCTCCCACACTCACACGTGCTACCATGTCCACACCAAAATCGTCCCCGCCCCTGAGGAGGACCATGTCGCCACCGATGACACCGCCGAGTCCGCCGAGAAGAAGTCGTCGTCGTCGAAGAAGCGGTCTCTGGGGAACAAAGAGGCCGTCCGGAAGTACCGCGAGAAGAAGAAGGCGCGTGCGGCGTCGCTGGAGGACGAGGTTGTGAAGTTGAGGGCTCTGAACCAGCACTTGATGAAGAAGCTGAAGGGGCAGGCGGCTCTCGAGGCCGAAATCGCGAGGCTCAAGTGTTTGTTGGTTGACATAAGGGGGAGGATTGAAGGGGAAATTGGGTCGTTTCCCTATCAGAAACCAACGCCGAATGCGAACCCTCCGGTGGCTAACTTGCCTGGTTCTTATGTGATGAACCCTTGTAACTTGCAATGTGATGATCGGGTGTATTGCCATCACCCCTATGGGAAAATTGGGGAGAGTGCGGCTTTGAATGGGGAAGAGTTTGATGGTTGTGAATTTGAGAACCTGCAGTGTCTGGCAAGCCAGAATTTGGGGCTCAAGGATCTTCGTGCCTGTGGGGTTGGACAGGCAAGGTCTAATGTAAATTCTTCTGCATCAAATAAAAGAAAAGGGGGATCTCATGCTGTGACAGCTGGTTGA 816 0.5404 MDDGELDFSNHEVFSSPNMGELPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAPEEDHVATDDTAESAEKKSSSSKKRSLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLKGQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKPTPNANPPVANLPGSYVMNPCNLQCDDRVYCHHPYGKIGESAALNGEEFDGCEFENLQCLASQNLGLKDLRACGVGQARSNVNSSASNKRKGGSHAVTAG* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0280 271 CDD bZIP 100 147 - -
Gso12g0280 271 Pfam Basic region leucine zipper 89 145 IPR004827 GO:0003700|GO:0006355
Gso12g0280 271 Coils Coil 101 135 - -
Gso12g0280 271 MobiDBLite consensus disorder prediction 72 106 - -
Gso12g0280 271 Gene3D - 80 156 - -
Gso12g0280 271 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 242 - -
Gso12g0280 271 SUPERFAMILY Leucine zipper domain 92 137 IPR046347 GO:0003700|GO:0006355
Gso12g0280 271 MobiDBLite consensus disorder prediction 11 25 - -
Gso12g0280 271 MobiDBLite consensus disorder prediction 72 112 - -
Gso12g0280 271 MobiDBLite consensus disorder prediction 1 27 - -
Gso12g0280 271 MobiDBLite consensus disorder prediction 251 271 - -
Gso12g0280 271 SMART brlzneu 88 155 IPR004827 GO:0003700|GO:0006355
Gso12g0280 271 PANTHER BASIC LEUCINE ZIPPER 23 1 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0280 Gso-Chr12 2516389 2520077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0280 1 270 bZIP Transcription Factor Family AT2G16770 62.132 8.49e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso12g0280 bZIP_2 4.9e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0280 K25785 - gmx:780549 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0280 12 2516389 2520077 Gso11g0921 11 8282572 8285408 GST