Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0279 ATGACTGTTGAAAAGAGAATTGTTTTGGTTGGGATTAGAATTGATGGCTATAGCAGACAGCTCCTCAACTGGGCACTTGCCAAAGTTGCTGAGCCTGGGGATTGTGTTATAGCAGTTCATGTTGTTAAAAGTTCGGATTATGTTTCCAAAAACAAGACTCTGATAGATGGCTATTTAGAAGTTTATGAAGGCCTATGTGGTGTGAAGAAGGTAGGTCTCACCGGTCAAATCTTCACAGGAAGCTCCATTAAAAACATTCTTGTTAGAGAAGCTAAAAAGCATGCTGCCCTGGCTCTAGTGTTAGGGGGTCGAGCTGCCACAGCTAAATATTGTGCTAAACGTCTACAACCCACCACCAATGTTCTAGCCATTCAAGACTCAAGAATTGTCTTCAGAAGTTGCACCAATAAACAACTACCAGGTGGTCTTATACTGGATCCAAGACCAAGTTTAACAATCATAAAAGAAAACTTGCGTGACAGAGCAATCCACTCTTCAATTTGTGACTCCATCGTGGAGATTGAGGAATCAACGCTCAAAAATTCCTTAGAATCGAAGGAAGAAGCGTTTAATGGGTCAGAAAAGAGCAAGTCAAGGTCAATATCCATGTTTGCAGGTGATTCTGCCGAACAGAAGCTTGGATGGCCTCTACTCCGCAGAGCCAATTCAGGAATGTCACAAACCCTTCATACAAGGGACATGTCAGTAGTACAATGGGTTATGACCTTACCAGATCGTTCACCAAATAAAGGTTCTAGCTCTTCTTCCACTGAGGAAAATCCATTTGAAAGGAGCATCAGCGATATTGAATATGAGAGCTCTTCAAATTCCTCTCCTTCATCTGTTGATATACCAAATGGCCTGGAAGAGATGTTAAATTTAAATTCTCTAAATTGCAAGCGGTTCAGCCTTGAGGTTCTGAAGTCTTGCACTAGCCAATTCTCTTCAGAAAAATTGGTTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAGTCCTCACTGATGGAAAATCAATCGCAGTTAAAGTAATGCAGTCATCAAAAGAAGCATGGAAAGATTTTGCCCTTGAGGTGGAAATAATATCCTCATTGGAGCACAAAAGCATTGCCCCTTTACTTGGGATTTGCATAGAGAACAATACTTTAATATCTGTTTATGACTATTTCCCCAATGGCAGCTTAGAGGAAAATCTGCATGGAAAGAACAAGGATGAATCCATCTTGTCATGGGAAGTAAGATTTAATGTGGCTATTAGGATCGCTGAGGCCCTTGATTACCTACACAGGGAAGCTTTGAAGCCTGTCATACATAAAGATGTCAAGTCGTCTAACATTCTTCTCTCCCAAGGGTTTGAACCTCAGTTGTCTGATTTTGGACTAGCAGTATGGGGACCAACAACTTCATCCTTTTTGACCCAAGATGTAGTTGGAACATTTGGTTACCTTGCTCCTGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGATGTCTATGCCTTCGGTGTAGTTTTACTTGAACTAATATCAGGAAGGGAACCTATCAACTCGGCAGCTTGCAAAGGACAGGAGAGCTTGGTCGTGTGGGCAAAACCAATAATAGAGAGTGGGAATGTTAAGGGCTTATTGGACCCAAATTTAGAAGGGAAATTTGATGAGGCCCAATTGCAAAGAATGGTTTTGGCAGCATCTTTATGCATCACACGGGCTGCTAGACTTCGTCCTAAACTGAGCCAGATACTGAAGATCCTAAAAGGAGAAGAGAAAGTTGAATATTTCTTAAACTCTCAAGGAGATAATGATCAGGAGGATTCAGAAAATCAAGAAAACATTGATGACGAAGTGTATCCAAATTCAAGTGCAGAGTTACACCTAAGTCTTGCATTACTTGGTGTTGACGATGACAGTACATCACATAGTAGCACAGACCACAGCTATAGTGAAGACTTGAAAGAACAATGGAGCAGGTCATCAAGTTTTAATTAG 1986 0.4119 MTVEKRIVLVGIRIDGYSRQLLNWALAKVAEPGDCVIAVHVVKSSDYVSKNKTLIDGYLEVYEGLCGVKKVGLTGQIFTGSSIKNILVREAKKHAALALVLGGRAATAKYCAKRLQPTTNVLAIQDSRIVFRSCTNKQLPGGLILDPRPSLTIIKENLRDRAIHSSICDSIVEIEESTLKNSLESKEEAFNGSEKSKSRSISMFAGDSAEQKLGWPLLRRANSGMSQTLHTRDMSVVQWVMTLPDRSPNKGSSSSSTEENPFERSISDIEYESSSNSSPSSVDIPNGLEEMLNLNSLNCKRFSLEVLKSCTSQFSSEKLVGKGGSNRVYKGVLTDGKSIAVKVMQSSKEAWKDFALEVEIISSLEHKSIAPLLGICIENNTLISVYDYFPNGSLEENLHGKNKDESILSWEVRFNVAIRIAEALDYLHREALKPVIHKDVKSSNILLSQGFEPQLSDFGLAVWGPTTSSFLTQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPINSAACKGQESLVVWAKPIIESGNVKGLLDPNLEGKFDEAQLQRMVLAASLCITRAARLRPKLSQILKILKGEEKVEYFLNSQGDNDQEDSENQENIDDEVYPNSSAELHLSLALLGVDDDSTSHSSTDHSYSEDLKEQWSRSSSFN* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0279 661 MobiDBLite consensus disorder prediction 245 263 - -
Gso12g0279 661 MobiDBLite consensus disorder prediction 634 661 - -
Gso12g0279 661 Gene3D Transferase(Phosphotransferase) domain 1 389 600 - -
Gso12g0279 661 SUPERFAMILY Protein kinase-like (PK-like) 295 584 IPR011009 -
Gso12g0279 661 ProSiteProfiles Protein kinase domain profile. 314 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0279 661 SMART serkin_6 314 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0279 661 MobiDBLite consensus disorder prediction 637 651 - -
Gso12g0279 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Gso12g0279 661 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 3 642 - -
Gso12g0279 661 MobiDBLite consensus disorder prediction 244 263 - -
Gso12g0279 661 PANTHER OS08G0249100 PROTEIN 3 642 - -
Gso12g0279 661 MobiDBLite consensus disorder prediction 184 203 - -
Gso12g0279 661 CDD USP_Like 8 104 - -
Gso12g0279 661 Pfam Protein kinase domain 315 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0279 661 Gene3D Phosphorylase Kinase; domain 1 281 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0279 Gso-Chr12 2508206 2512203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0279 301 659 Trihelix Transcription Factor Family AT1G70460 39.011 5.11e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso12g0279 Pkinase 3.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0279 - - gmx:100789189 1248.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0279 12 2508206 2512203 Gso11g0920 11 8275618 8279463 GST