Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0272 ATGGGAAGGTCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACTAAAGAAGAAGATGACAGACTCATATCTTATATTCGAGCTCACGGCGAAGGCTGCTGGCGTTCACTCCCCAAAGCCGCCGGCCTTCTCCGGTGCGGCAAGAGCTGCCGTCTCCGGTGGATCAACTACCTCCGCCCCGACCTCAAAAGAGGTAACTTTACCGAAGAAGAAGATGAACTCATCATCAAACTCCACAGTCTCCTCGGTAACAAGTGGTCTTTGATAGCTGGAAGATTGCCGGGGAGAACAGACAATGAAATAAAGAATTATTGGAACACGCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCTACTCATAGGCCACTCAACGAAGCTGCTTCTGCTGCAACTGTTACAACTGCCACCACTAATATATCTTTTGGGAAACAACAAGAACAAGAGACAAGTTCTAGTAACGGAAGCGTTGTTAAAGGTTCCATCTTGGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCAACAACAACCTCAGAAGAATCTTTGTTTTGTTTGCAGTTTGGGTTTGAACAACAGCAAGGATTGTAGCTGCAACGTTGCCAACACTGTTACTGTTACTGTCAGCAACACTACTCCTTCTTCTGCTGCTGCTGCTGCTTATGATTTCTTGGGCATGAAAACCAACGGTGTTTGGGATTGCACCCGCTTGGAAATGAAATGA 753 0.4688 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASAATVTTATTNISFGKQQEQETSSSNGSVVKGSILERCPDLNLELTISPPRQQQPQKNLCFVCSLGLNNSKDCSCNVANTVTVTVSNTTPSSAAAAAYDFLGMKTNGVWDCTRLEMK* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0272 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso12g0272 250 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 213 - -
Gso12g0272 250 CDD SANT 69 112 IPR001005 -
Gso12g0272 250 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Gso12g0272 250 CDD SANT 16 61 IPR001005 -
Gso12g0272 250 Gene3D - 14 66 - -
Gso12g0272 250 SMART sant 66 114 IPR001005 -
Gso12g0272 250 SMART sant 13 63 IPR001005 -
Gso12g0272 250 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso12g0272 250 Gene3D - 69 140 - -
Gso12g0272 250 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 213 - -
Gso12g0272 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso12g0272 250 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso12g0272 250 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso12g0272 250 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0272 Gso-Chr12 2436420 2437765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0272 1 250 MYB Transcription Factor Family AT4G38620 59.859 6.56e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g0272 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0272 K09422 - gmx:778030 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0272 12 2436420 2437765 Gso11g0913 11 8209638 8210972 GST