Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0266 ATGCATAGAGCGATCGTGTTTCTCATTCACCCACGATTCCTCCTCCTCTTCCTTGTCCTCTCAATTTTCCTCATTTTCACATTTTCTGGTTCTACTACTACCAGTGGTTTTGCTACACCTCAACAGGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCTGAAATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGGTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGGAAAATTTTAGAGCTTTGTGTACAGGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGTTCATCATGATGGTAAAGGGTCTGAATCTATTTATGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGGTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTTCTTTACCACAGTGAAGGCCAGATGGTTGGATGGAGAGCATGTTGTCTTTGGCAGGGTTGTTCAAGGCATGGATATTGTGTATGTAATTGAAGGGGGAGCCGGAACCTACAGTGGAAAACCCAGAAAGAAGGTAGTGATAGCAGACTCTGGGGAGATACCAAAGAACCACTGGGATGAGGAAAATTGA 711 0.4149 MHRAIVFLIHPRFLLLFLVLSIFLIFTFSGSTTTSGFATPQQVVEIIEEKPEEEPEITHRVFLDIDIDKQRLGRIVIGLYGKVVPKTVENFRALCTGEKGKSENGIKLHYKGTPFHRIISGFVIQGGDIVHHDGKGSESIYGGTFPDDNFKIKHSHAGVVSMANSGPDSNGSQFFFTTVKARWLDGEHVVFGRVVQGMDIVYVIEGGAGTYSGKPRKKVVIADSGEIPKNHWDEEN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0266 236 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 62 226 IPR002130 GO:0000413|GO:0003755
Gso12g0266 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 79 94 IPR002130 GO:0000413|GO:0003755
Gso12g0266 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 IPR002130 GO:0000413|GO:0003755
Gso12g0266 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 158 173 IPR002130 GO:0000413|GO:0003755
Gso12g0266 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Gso12g0266 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Gso12g0266 236 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 110 127 IPR020892 GO:0003755|GO:0006457
Gso12g0266 236 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 65 224 IPR002130 GO:0000413|GO:0003755
Gso12g0266 236 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 25 236 - -
Gso12g0266 236 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 25 236 - -
Gso12g0266 236 SUPERFAMILY Cyclophilin-like 56 227 IPR029000 -
Gso12g0266 236 Gene3D - 46 233 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0266 Gso-Chr12 2374709 2380553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0266 73 224 U-box Gene Family AT5G67530 42.484 5.82e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0266 - - gmx:100808983 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0266 12 2374709 2380553 Gso11g0906 11 8146163 8151789 GST