Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0261 ATGAGTGGTAGGGTTTCTGGGAAGGTGAAGTGGTTCAATGATCAGAAGGGGTTTGGATTCATAAGCCCTGACGATGGCAGCGACGATCTCTTCGTTCACCAATCTCAGATCAAATCTGACGGTTTCCGAAGCCTCGCCGAAGGAGAGTCCGTTGAGTTCGCCATTGAATCTGAATCTGACGGACGCGCTAAGGCTGTTGATGTCACTGGCCCCGACGGCGCCAGCGTCCAGGGAACCAGACGAGGCGGTGATGGTGGCCGAAGCTATGGCGGGGGACGAGGAGGTGGTGGAGGTGGCTACGGTGGAGGCGGTGGCTACGGTGGTGGTGGTGGCTACGGTGGAGGTGGTGGTTACGGTGGTGGTGGAAGAGGCGGTGGAGGCGGTGCTTGCTACAACTGTGGTGAATCGGGACATCTGGCTAGGGATTGCAGTGGAGGCGGTGGTGGGGACAGGTACGGAGGAGGTGGTGGTGGTGGCAGATATGGAGGCGGCGGTGGCGGGAGGTACGGTGGTGGTGGAGGCGGCGGCGGCGGCGGAGGAAGCTGCTACAGCTGTGGAGAGTCTGGGCATTTTGCCAGAGATTGCCCATCAAGTGCTCGTTGA 603 0.6036 MSGRVSGKVKWFNDQKGFGFISPDDGSDDLFVHQSQIKSDGFRSLAEGESVEFAIESESDGRAKAVDVTGPDGASVQGTRRGGDGGRSYGGGRGGGGGGYGGGGGYGGGGGYGGGGGYGGGGRGGGGGACYNCGESGHLARDCSGGGGGDRYGGGGGGGRYGGGGGGRYGGGGGGGGGGGSCYSCGESGHFARDCPSSAR* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0261 200 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Gso12g0261 200 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Gso12g0261 200 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Gso12g0261 200 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Gso12g0261 200 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Gso12g0261 200 Pfam Zinc knuckle 181 197 IPR001878 GO:0003676|GO:0008270
Gso12g0261 200 Pfam Zinc knuckle 129 144 IPR001878 GO:0003676|GO:0008270
Gso12g0261 200 PANTHER COLD SHOCK PROTEIN 1 4 198 - -
Gso12g0261 200 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Gso12g0261 200 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Gso12g0261 200 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Gso12g0261 200 ProSiteProfiles Zinc finger CCHC-type profile. 182 197 IPR001878 GO:0003676|GO:0008270
Gso12g0261 200 Gene3D - 177 200 - -
Gso12g0261 200 Gene3D - 123 151 - -
Gso12g0261 200 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Gso12g0261 200 MobiDBLite consensus disorder prediction 62 93 - -
Gso12g0261 200 ProSiteProfiles Zinc finger CCHC-type profile. 130 143 IPR001878 GO:0003676|GO:0008270
Gso12g0261 200 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Gso12g0261 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 198 - -
Gso12g0261 200 SUPERFAMILY Retrovirus zinc finger-like domains 121 147 IPR036875 GO:0003676|GO:0008270
Gso12g0261 200 SUPERFAMILY Retrovirus zinc finger-like domains 163 198 IPR036875 GO:0003676|GO:0008270
Gso12g0261 200 Gene3D - 1 82 IPR012340 -
Gso12g0261 200 SMART csp_8 6 71 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0261 Gso-Chr12 2314613 2315501 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gso12g0261 CSD 7.6e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0261 - K09250 gmx:100795875 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0261 12 2314613 2315501 Gso11g0902 11 8090329 8091246 GST