Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0260 ATGGCTTCCCTCTATGACGTGCTTGGAATTTCAGTGGGTGCAAGCTGCATCGAAATAAAGGCTGCTTACAGAAAGCTGGCAAGAACACACCATCCTGATGTTGTGGCCATGGATCAGAAGGAAAGCTCAGCGAACCAATTCATGATGATCCATTCAGCTTACTCAACTTTGTCTGACCCAGAGAAGCGAGCACAATATGATAGAGAAATCTATAGATACAGAAGATCAGCAAATATAGCAGGAAGAAATCAGACATTTTCCTATGCTGGAAGTGGAAGGAAATGGGAAACAGACCAATGTTGGTAA 306 0.4314 MASLYDVLGISVGASCIEIKAAYRKLARTHHPDVVAMDQKESSANQFMMIHSAYSTLSDPEKRAQYDREIYRYRRSANIAGRNQTFSYAGSGRKWETDQCW* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0260 101 Pfam DnaJ domain 4 67 IPR001623 -
Gso12g0260 101 PRINTS DnaJ domain signature 5 23 IPR001623 -
Gso12g0260 101 PRINTS DnaJ domain signature 23 38 IPR001623 -
Gso12g0260 101 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gso12g0260 101 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gso12g0260 101 PANTHER - 2 101 - -
Gso12g0260 101 SUPERFAMILY Chaperone J-domain 2 88 IPR036869 -
Gso12g0260 101 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Gso12g0260 101 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gso12g0260 101 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 101 - -
Gso12g0260 101 CDD DnaJ 5 59 IPR001623 -
Gso12g0260 101 SMART dnaj_3 2 62 IPR001623 -
Gso12g0260 101 Gene3D DnaJ domain 1 88 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0260 Gso-Chr12 2303489 2304388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0260 5 67 C2H2 Transcription Factor Family AT1G74250 44.776 1.30e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0260 - - gmx:100798520 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0260 12 2303489 2304388 Gso11g0901 11 8076090 8076863 GST