Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0253 ATGGAGAGATCCTATGATGTCTTTGTTTTTCTCCTTGTCTCGGTTCTTTGTCTCTTCCTGTCCCAACCAGCAAGATCACAAGATGATTCACAACCGCTTCTGGCATTGAAATCCTCCATAGACGTTCTCAACAAGCTTCCATGGCGAGAAGGAACCGACGTGTGCACGTGGTTAGGGGTCAGAGACTGCTTCAACGGAAAAGTGAGGAAGCTAGTTCTGGAACACTCCAACTTAACCGGTTCTCTGGATTCCAAGATCTTGAACCGTTTGGACCAGCTCCGAGTCCTCAGTTTCAAAGGAAACTCGCTCTCCGGGCAAATACCCAACATCTCCGCCTTGGTCAACCTCAAATCGATTTTCCTCAACGAAAACAACTTCTCCGGCGATTTTCCCGCCTCCGTCGCCCTCCTCCACCGCGTGAAAGTCATTGTACTGTCGCAAAACCATATCTCCGGCGAAATTCCGGCGTCGCTGCTGAATCTCCGGCGACTGTACGTTCTCTACTTGCAAGACAACGCGTTGACTGGACGCATTCCCGGTTTCAACCAGAGCAGCCTCAGGTATTTAAACGTTTCGAAAAACCGTCTATCCGGCGAGATTCCGGTGACGTCGGCATTGATCCGGTTCAATGAGTCGTCGTTTTGGGGGAACCCGGGGCTCTGCGGGGAACAGATCGAAGAAGCATGCAAAAACGGAAGCGGTTCAATGCCGCCATCGATAAGCCCTAGCTATCCGTTGAAACCGGGAGGAACAACGTCAACGACGATGGGGAAATCGAAGCGCACGAAATTGATAAAGATAATTGGAGGGAGCGTTGGGGGAGTTGTTTTTGCATTAGGATGCGTGGTTTTGGTGTGGGTGATTTGCAGGAAGTGGAAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAAGGGTGGTGCTGAAGTGGCAGAAGGGGAAGTGGGTGCGGCGGGAAGTGGGGGAGGAGGTGATAATAGTAAAGAAGAAGAAGGTGGGGGGTTTGCGTGGGAAAGTGAGGGTATAGGGAAGCTGGTGTTCTGCGGAGGAGGGGATGGGGACATGAGTTATAGTTTGGAGGATTTGCTCAAGGCTTCGGCGGAGACACTGGGGAGGGGTATAATGGGAAGTACGTATAAGGCAGTGATGGAATCGGGGTTCATAGTTACTGTGAAGAGGTTGAAAGATGCAAGGTACCCTGGCTTGGAAGAGTTCAGTGCTCACATTCAAGTCCTTGGGAGGCTCACCCACCCTAACCTCGTCCCTCTCAGGGCTTATTTCCAGGCTAAGGAGGAACGCCTCCTCGTTTATGATTACTTTCCTAATGGCAGCCTCTTCTCCCTTATTCACGGATCGAAAACATCTGGTGGGGGAAAGCCTCTTCACTGGACATCCTGCCTTAAAATTGCTGAGGATCTAGCAACAGGCATGCTCTATATCCACCAGAACCCTGGCTTGACACATGGAAACCTGAAATCTTCTAATGTATTGTTGGGTTCTGACTTTGAGTCATGTCTTACTGATTATGGTCTCACTGTGTTCCTTAATCCTGACACAATGGATGAGCCTAGTGCAACTTCTTTGTTCTATAGAGCACCTGAATGCCGCAACTTTCAAAGGTCACAAACTCAACCAGCTGATGTATACAGTTTCGGGGTCCTTCTTCTTGAGCTTTTAACTGGCAAAACACCCTTCCAAGACCTTGTTCAGACATATGGTTCAGACATACCTAGGTGGGTTCGGTCAGTGCGCGAAGAGGAGACGGAGTCTGGGGATGATCCTGCTTCAGGCAATGAAGCATCTGAAGAGAAGCTTCAGGCTCTTTTGAACATTGCAATGGCATGTGTTTCACTAGTGCCGGAGAACAGGCCTACAATGAGAGAAGTTTTAAAGATGATAAGAGATGCAAGAGGGGAGGCTCATGTCTCATCTAACAGTAGTGATCACTCCCCTGGTAGATGGTCAGATACTGTTCAAAGCTTTCCAAGGGAAGAACACCAGAGCATATGA 2004 0.495 MERSYDVFVFLLVSVLCLFLSQPARSQDDSQPLLALKSSIDVLNKLPWREGTDVCTWLGVRDCFNGKVRKLVLEHSNLTGSLDSKILNRLDQLRVLSFKGNSLSGQIPNISALVNLKSIFLNENNFSGDFPASVALLHRVKVIVLSQNHISGEIPASLLNLRRLYVLYLQDNALTGRIPGFNQSSLRYLNVSKNRLSGEIPVTSALIRFNESSFWGNPGLCGEQIEEACKNGSGSMPPSISPSYPLKPGGTTSTTMGKSKRTKLIKIIGGSVGGVVFALGCVVLVWVICRKWKRRRRRRRRRKGGAEVAEGEVGAAGSGGGGDNSKEEEGGGFAWESEGIGKLVFCGGGDGDMSYSLEDLLKASAETLGRGIMGSTYKAVMESGFIVTVKRLKDARYPGLEEFSAHIQVLGRLTHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGMLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDTMDEPSATSLFYRAPECRNFQRSQTQPADVYSFGVLLLELLTGKTPFQDLVQTYGSDIPRWVRSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLVPENRPTMREVLKMIRDARGEAHVSSNSSDHSPGRWSDTVQSFPREEHQSI* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0253 667 Gene3D Ribonuclease Inhibitor 183 232 IPR032675 -
Gso12g0253 667 ProSiteProfiles Protein kinase domain profile. 362 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0253 667 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Gso12g0253 667 MobiDBLite consensus disorder prediction 299 331 - -
Gso12g0253 667 SUPERFAMILY L domain-like 33 222 - -
Gso12g0253 667 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 28 655 - -
Gso12g0253 667 SUPERFAMILY Protein kinase-like (PK-like) 366 642 IPR011009 -
Gso12g0253 667 MobiDBLite consensus disorder prediction 638 667 - -
Gso12g0253 667 Pfam Protein kinase domain 365 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0253 667 MobiDBLite consensus disorder prediction 234 257 - -
Gso12g0253 667 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 28 655 - -
Gso12g0253 667 MobiDBLite consensus disorder prediction 231 257 - -
Gso12g0253 667 MobiDBLite consensus disorder prediction 641 667 - -
Gso12g0253 667 Gene3D Transferase(Phosphotransferase) domain 1 438 654 - -
Gso12g0253 667 Gene3D Phosphorylase Kinase; domain 1 350 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0253 Gso-Chr12 2254297 2260240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0253 15 667 Receptor kinase-like Gene Family AT1G60630 61.991 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso12g0253 Pkinase 2.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0253 - - gmx:100809866 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0253 12 2254297 2260240 Gso11g0894 11 8011144 8016344 GST