Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0245 ATGGTAGCGATCATGCAACAGCAGCAGCAGCAACAACAGCAACAGCAGAACCCCTCTGCACTGGTGCCATTTCAGCTCAAGAATCCCCAATCCTCCACCACAACCGCCGCCGCCGCCACTCCCCTTAGGTCACCCTCCGCCCAGTCGCAGCTCTCCTCGCCGCTATCCGTCGTCCCGCCCCTCCGGCAATCCCCACTCTCCTCGCATCCGGTGCCGGTTACGTCTGTGGAGCCCGCTCTGACGGCGGTACCGACGTGTCCGCTGGTCAGAGTCCGGCTCTCGGACATTGCCCCCTATGAAGGGGCACCGGCGGGGCCCTATCTCAGAGCAATGGAGGCACTGTGTGGGTCTCTGTTGCGGCACAATGCTGCGTTGATCGAATTGGGGAACGAAGACACTGCTCTGATGCGATGCGGCTTGGAAGGTGCGAGGTTGTTTTTCAGAAGTAGGGCCCACCTTGGTTCTGGCAAGGGTAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTGGAGGATTGGGATTCTTCTCCCCCCTGCATGGCTGATATTTTTAAGTGCATGGGAAAGGCGTCTCGATCTGCCTTGAGTGCCATTGCGAGGCATTTGCGTCTTAGAAGCGATGTTTTTAACCATTTGCTTGATGATGCTCCATTGCCTGCTAATGAGGTGTCTTCATCAGTTCTTGTTGTGACCTACTCACATGCTTCTTTGCAAAATGGAAGAGGTGCCATTGGAGGTGGTAAGCCTCCCATGAATGGTGAAGTTGAGAAGGGATTGTTGACATTGATATCTTCAGACACTCCTGGTCTTCAGGTATGTGACCCCAGTGGTCGCTGGTATCTGGCAGACAGTGGGTCTGTGCCTGGAGATCTTTTACTCATAACAGGCAAGGCACTTACCCATGCTACTGCTGGCCTATGTCCTGCTGCATCATATAGAGCTTCTCCTGATTATTTTCTGAGTCCTAATGGTGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCCCCAATTGCAGCAGCTGGCCATGTTATTCCCCAAAGTTATGTTCGAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCCGAAGAACTGATAGGCAGCAGATGTGATAATGCTGATGCTGCTGCTCAAAACAATGTGAATAAGGAGCCATCATTAAGAAGTGTTCTATCAGATCCTTTATCTGGCACATTCCTTGAAGATGCCATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTGAGGAGAGTCATTGAAACGTCAAGATGTACTCTCTGCAATGCAGAAATTGAAACTGGTTCTTTGATCCCTAATCATGCTCTTAGAGCTGCAGCAGCCGCTGTCAAGCATGAGGACGATCGGAGGTTATTTCGTAATGCCGCTCTCCGAAAGCGGCGGAAAGAAATGGGTGACCAAATGGATTCAATGAGAAGAGTGAATAGGGAAAATGGAGATTTTAATGCTACCGATGGACTTCAGCGGGGCGTACAATATCCATTTTCGGTAAATGAGAAAGTTGTTATTAAGGGCAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTGTGATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGAAACCGGAGAGAATGTCCGCCTGCAGTACCGTTCTCTTAGGAAGATCTTAAACTCACCAGCGGACCAGTGTCCCTCACAGCCAATTCAAAATAGCAGCTCTTAA 1764 0.4966 MVAIMQQQQQQQQQQQNPSALVPFQLKNPQSSTTTAAAATPLRSPSAQSQLSSPLSVVPPLRQSPLSSHPVPVTSVEPALTAVPTCPLVRVRLSDIAPYEGAPAGPYLRAMEALCGSLLRHNAALIELGNEDTALMRCGLEGARLFFRSRAHLGSGKGSRGVYMYRAGRALEDWDSSPPCMADIFKCMGKASRSALSAIARHLRLRSDVFNHLLDDAPLPANEVSSSVLVVTYSHASLQNGRGAIGGGKPPMNGEVEKGLLTLISSDTPGLQVCDPSGRWYLADSGSVPGDLLLITGKALTHATAGLCPAASYRASPDYFLSPNGGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQSYVRISVSQFMDDLAAEELIGSRCDNADAAAQNNVNKEPSLRSVLSDPLSGTFLEDAMLVSCGHSFGGLMLRRVIETSRCTLCNAEIETGSLIPNHALRAAAAAVKHEDDRRLFRNAALRKRRKEMGDQMDSMRRVNRENGDFNATDGLQRGVQYPFSVNEKVVIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIETGENVRLQYRSLRKILNSPADQCPSQPIQNSSS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0245 587 Gene3D - 158 376 IPR027443 -
Gso12g0245 587 MobiDBLite consensus disorder prediction 1 73 - -
Gso12g0245 587 SUPERFAMILY RING/U-box 398 464 - -
Gso12g0245 587 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 82 585 - -
Gso12g0245 587 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 82 585 - -
Gso12g0245 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 480 IPR013083 -
Gso12g0245 587 SUPERFAMILY beta-sandwich domain of Sec23/24 6 76 - -
Gso12g0245 587 MobiDBLite consensus disorder prediction 1 71 - -
Gso12g0245 587 SUPERFAMILY Clavaminate synthase-like 178 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0245 Gso-Chr12 2167899 2177769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0245 398 584 Plant U-box Gene Family AT5G05230 38.298 7.80e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0245 - - gmx:100807199 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0245 12 2167899 2177769 Gso11g0885 11 7934719 7942840 GST