Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0235 ATGTCGCGCCAGACGACGTCGTCTGCTTTCACTAAATCGAAGACCCTCGACAATAAATATATGCTGGGAGATGAGATTGGAAAAGGAGCTTATGGTCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGATTTTGTTGCCATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATTATCATGCAAGAGATTGACTTGTTGAAGAATTTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCAAAGACAAAAAGTCACCTGCACATAGTTCTTGAGTATGTGGAGAATGGCTCACTTGCAAATAATATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCACTATATATTGCCCAGGTGTTGGAAGGTTTGGTTTATCTACACGAACAGGGTGTTATCCATCGGGATATTAAGGGTGCAAACATATTGACAACTAAAGAGGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGGTTATCGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACGGTTATTGAACTTCTGACATGTGTACCTCCTTATTATGATTTGCAGCCTATGCCAGCTCTTTTCCGTATTGTCCAGGATGAGCATCCACCAATTCCAGATAGCCTTTCACCTGATATTACTGATTTTTTGCTTCAATGCTTTAAGAAGGATGCTAGACAAAGACCTGATGCTAAAACTCTGTTGTCTCACCCCTGGATTCAAAACTTTAGACGTGCCCTGCAGTCTTCTCTTCGTCATAGTGGAACACTAAGAAATATTGAAGATGATTCTGCAGATGCAGAAGTTTCTGGTGGTTATCATAAGAGTGCTTATGAAAACTCTTCTGTGGAGAAAGAGGAGTCTGCAAAAGAGCATACAAGTGTGGCTGCTGATGGCAGCAAAGCTCATGAAGACAATGCTGCAGATGATGTTCCACCGGATCAGGTTCTTACCTTAGCCATTCGTGAGAAGTCATTTCTACAAGCTGGTTCTAACAGAGAAGTGGTTAATTCCGAGTCTACTGGCAATCATGAAATTTCTAACGCTAAAGATCTTCATGAAGTTGTGAAGAATGGAGAAGTTGGATCTCCACAATCAAGAGGAATGGCTAACAAGTTTGGAGGAAAAGACAATTCTGTAAACAATGGCAACAAATCATTTGCTTTTGGGCCAAGAGGTCAAGATAATGATTTCCTTAAGGCAATGAAGATGCCAACCACTGTGGAAGGGAATGAGCTGAGTAGATTTAGTGACCCGCCAGGAGATGCCTACTTGGATGATTTATTTCATCCATTGGATAAACAACCTGGAGAGGTTGTAGCAGAAGCGTCCACATCTACATCCACTTCACATATGACTAAAGGTTATGCATCGGCAATTGATGGTGGGAAAAATGACCTGGCTAAAGAGTTGAGAGCTACAATTGCTCGAAAGCAATGGGAGAAGGAAACTGAAATTGGACAGGCAAACAATGGTGGGAATCTTTTGCACCGAGTGATGATAGGCGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCGAAAAACTTCCTGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAGTTCAGCAAACTAGTCAGTTCATTAAAACCAGAGGAATCAGAAGACGTGATTGTTTCTGCATGTCAGAAACTTATTGGTATATTTCACCAGCGTCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGCTTACTTCCTCTAACAGATTTGCTAGAAGTTCCCAAAACACATGTCATATGTTCTGTGCTTCAACTTATAAATCAAATAGTTAAGGACAACACTGATTTTCTAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGTCCTCGAGAGATTCGTATGGAAGCGGCTTATTTTTTACAGCAGCTTTGTCAGTCAAGTTCTTTAACATTACAAATGTTTATAGCTTGCCGCGGAATACCTGTTTTAGTGGGATTTCTTGAGGCTGATTATGCCAAGTACAGGGAGATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACTCCTAGAAATGATTTTTGCCGAATAGCTGCTAAGAATGGAATACTTCTCAGGCTTATAAATACTCTTTATAGCTTAAACGAGTCAACTCGACTAGCTTCTAGCTCTGCTGGGGGTGGATTTTCAGTTGATGGTTCAGCTCAACGCCCACGATCTGGTATCTTGGATCCCAATCATCCTTCTATCAATCAGAATGAGACAGTGTTATCTTCAGTAGATCAGCAAGAACCCCCTAAAGTGAGACATGCAGTACCTGATCATCACTTAGAACCTTCATCATCCAATCCTCGAAGATCAGATGCTAACTACCCTGTGGATGTTGATAGACCCCAATCAAGCAATGCGACAGCTGATGAAAAGAGTTCGACCCAAACATCCAGAGAATCTTCGGCAAGTGCATTGAAAGAGCGAGGGAATATGGATCGTTGGAAAACTGATCCTTCTCGAGCAGATGTTGAATCCAGACAGCCATGTATTTCTACTAACCGGACATCAACTGATAGGCTTCCAAAATCTACAGAACCATCATCAAATGGGTTATCAGTAACAGGAGCTACGCACCAAGAGCAAGTTAGGCCTCTTCTTAGCTTGTTGGATAAAGAGCCCCCATCTGGCCGCTTTTCTGGACAGCTTGAGTATGTGCGTCAGTTTTCAGGATTAGAAAGACATGAAAGTGTACTCCCTTTGTTACATGCCACTGAAAAGAAAACAAATGGTGAACTAGACTTTTTGATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAGGGAAAATGGAAATTTTGACTCTAGTGCTAGAGTTTCTCATAAAGTCACTCCCAAGAAATTAGGGACTTTGGGTTCCAGTGAAGGAGCTGCTTCCACATCTGGGATTGCATCACAGACAGCTTCAGGTGTACTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGATAGTGCTACTTCGTCTGGACTACTTTCCCACATGGTTTCATCGCTGAATGCAGAAGTTGCCAGAGAGTATCTGGAGAAAGTGGCAGATCTTCTTCTTGAGTTTGCACAGGCAGACACCACTGTGAAATCTTATATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACCGATCCAAATTGCTTAGAAAATCTTCAGCGTGCTGAAGCAATAAAATACTTGATACCAAATCTTGAACTGAAAGAAGGATCTCTTGTATCAGAGATACATCACGAGGTCTTGAACGCACTATTCAATTTATGCAAGATAAATAAGAGGAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTGATGCAATTCATCACATCAAATTCTCCCTTGAAACAATATGCATTGCCTCTGCTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAATTAAGGGCTCATGGCGGTTTGGATGTCTATTTGAATCTTCTTGAGGATGAGCTTTGGTCTGTGACAGCACTAGACTCTATTGCTGTTTGTTTAGCCCACGACAATGATAATAGGAAGGTTGAACAAGCACTGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGGGCTGTCCAGAGCAACATTTTGTACACATATTGGAGCCATTCTTGAAAATCATCACAAAATCTGCAAGGATCAATACCACATTGGCTGTTAATGGATTAACACCACTTCTCATTGCAAGGCTAGATCATCAGGATGCTATAGCTCGTCTTAATTTACTCAGGCTAATAAAGGCCGTTTATGAGCATCACCCTCAGCCCAAGAAGTTGATTGTGGAGAATGATCTACCTGAAAAACTTCAAAACTTGATAGGGGAACGGAGAGATGGACAAGTGTTGGTTAAACAGATGGCTACTTCATTACTTAAAGCACTACACATAAACACCGTTTTGTAA 4137 0.415 MSRQTTSSAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANNIKPNKFGPFPESLVALYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMAGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDARQRPDAKTLLSHPWIQNFRRALQSSLRHSGTLRNIEDDSADAEVSGGYHKSAYENSSVEKEESAKEHTSVAADGSKAHEDNAADDVPPDQVLTLAIREKSFLQAGSNREVVNSESTGNHEISNAKDLHEVVKNGEVGSPQSRGMANKFGGKDNSVNNGNKSFAFGPRGQDNDFLKAMKMPTTVEGNELSRFSDPPGDAYLDDLFHPLDKQPGEVVAEASTSTSTSHMTKGYASAIDGGKNDLAKELRATIARKQWEKETEIGQANNGGNLLHRVMIGVLKDDVIDIDGLVEKLPGENLFPLQAVEFSKLVSSLKPEESEDVIVSACQKLIGIFHQRPEQKIVFVTQHGLLPLTDLLEVPKTHVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASSSAGGGFSVDGSAQRPRSGILDPNHPSINQNETVLSSVDQQEPPKVRHAVPDHHLEPSSSNPRRSDANYPVDVDRPQSSNATADEKSSTQTSRESSASALKERGNMDRWKTDPSRADVESRQPCISTNRTSTDRLPKSTEPSSNGLSVTGATHQEQVRPLLSLLDKEPPSGRFSGQLEYVRQFSGLERHESVLPLLHATEKKTNGELDFLMAEFADVSQRGRENGNFDSSARVSHKVTPKKLGTLGSSEGAASTSGIASQTASGVLSGSGVLNARPDSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQGCPEQHFVHILEPFLKIITKSARINTTLAVNGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL* 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0235 1378 MobiDBLite consensus disorder prediction 806 821 - -
Gso12g0235 1378 MobiDBLite consensus disorder prediction 861 878 - -
Gso12g0235 1378 MobiDBLite consensus disorder prediction 761 912 - -
Gso12g0235 1378 MobiDBLite consensus disorder prediction 822 860 - -
Gso12g0235 1378 SMART arm_5 1163 1202 IPR000225 GO:0005515
Gso12g0235 1378 SMART arm_5 595 635 IPR000225 GO:0005515
Gso12g0235 1378 SMART arm_5 1117 1161 IPR000225 GO:0005515
Gso12g0235 1378 Gene3D Transferase(Phosphotransferase) domain 1 17 306 - -
Gso12g0235 1378 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0235 1378 Gene3D - 555 764 IPR011989 -
Gso12g0235 1378 SUPERFAMILY ARM repeat 1044 1371 IPR016024 -
Gso12g0235 1378 MobiDBLite consensus disorder prediction 784 801 - -
Gso12g0235 1378 MobiDBLite consensus disorder prediction 366 415 - -
Gso12g0235 1378 MobiDBLite consensus disorder prediction 881 912 - -
Gso12g0235 1378 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gso12g0235 1378 PANTHER MAP KINASE KINASE KINASE 2 1337 - -
Gso12g0235 1378 MobiDBLite consensus disorder prediction 313 344 - -
Gso12g0235 1378 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0235 1378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Gso12g0235 1378 CDD STKc_Cdc7_like 19 274 - -
Gso12g0235 1378 SUPERFAMILY ARM repeat 566 761 IPR016024 -
Gso12g0235 1378 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Gso12g0235 1378 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Gso12g0235 1378 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Gso12g0235 1378 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Gso12g0235 1378 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0235 1378 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Gso12g0235 1378 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 1337 - -
Gso12g0235 1378 Gene3D - 1030 1375 IPR011989 -
Gso12g0235 1378 MobiDBLite consensus disorder prediction 292 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0235 Gso-Chr12 2004215 2026727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0235 1 1378 MAP Kinase Kinase Kinase AT3G13530 71.742 0.0 1962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Gso12g0235 Pkinase 1.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0235 - - gmx:100803471 2686.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0235 12 2004215 2026727 Gso11g0864 11 7727902 7746918 GST