Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0233 ATGGGCAAGTCAAGCAAGAAATCAGCTCTCAAGGTCGACGCTGTTCCAGCTGTGGTTCCGCCATCCAAGTCTGCCAAGAAGGGAGGCAAGAGACAAGCTCAAGATGAAATTGAGAAGCAATTGAGTGCCAAAAAACAGAAGATAAATGAGGTTGCTCAGAAACAAAAGGAGGCAAAGGTGCAAAAGAAGGAAAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCACCCAAATCTGCTGTTCTTTCAAAAAAGATACCTGCTAAGAATGGTGCTGCCCCTCCAAAGAAAGGCAAGCTCGCCTCCAGTTCTTCTGAAGATGACTCCTCTGATGAGGATGGTGTGCGTGCAAAGAAGCCACAGAAAATGGTTGCTGAGAAACAAAAGAATGGAGCAACTGTGCAAAAGAAAAAGGTGGAAAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGCTGAGAAACCTGCAGTAAAAGCTACTGTACCTTCAAAAAAGACACCTACTAAAAATGGCAATTTAAGTACCCCAGCAAAGAAAGGCAAGGCAGCTAGCAGCTCCAGTTCTTCTGATTCATCTGAAGATGACTCTTCTGATGAGGATGAAGTGGCTACAAAAAAGCAAACAAAAGAAGTGAAAGTGCAAAAGGGTAAGGAGGAAAGTAGTTCAGATGATTCTTCATCCGAATCTGAAGATGAGAAACCCGCAGCAAAAGTTGCTGTTCCTCCAAAAAATCAATCTGCCAAAAATGGTACTCTAAGTACTCCAGCTGAGAAAGGCAAGCCAGCTGCCAGTTCAAGCTCATCTGAATCATCTGATGATGACTCTGATGAGGATGAAGCTCCAAAATCCAAGGTGGCCCCTGCAGCAGGCAAGAATGTACCTGCTTCTACAAAGATAACTCAGCCAAGTGAAAGCTCTGAGTCTGATTCTGATAGCAGCTCTGATGAGGACAAAAATAAGAAAAAACCTGCAACTGCTAAGCTGCCTGCATTGTCAGTTGCTCCAGCTTTGAAAGTGGAAAGCTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGACAATGATGCAAAACCCGCCGTAACTGATGTGTCAAAGCCTTCTGCTCTTGCAAAGAAGAAGGTTGACAGCTCTGATTCTGATGATAGCAGCTCTGATGAAGATAAGGGGAAGATGGATATTGATGATGATAGTTCTGATGAAAGTGAAGAGCCACAAAAGAAAAAGACTGTGAAAAATCCAAAAGAAAGCAGTGATAGTTCCGAAGAAGACAGTGAGGATGAAAGTGAGGAGGAACCCTCCAAAACTCCTCAGAAAAGAGACAGGGATGTGGAGATGGTTGATGCTGCCTCGTCTGGAAAGAAAGCGCCTAAGACCCCAGTTACACCCAAAGAAGAAACTGGCGCTTCAAAGACACTATTTGTTGGGAACTTGCCATTTAGTGTTGAACGAGCTGACGTGGAAGATTTCTTCAAGGATGCTGGAGAAGTTGTTGATGTTCGATTTGCTACAGATGATACTGGGAAGTTTAAAGGATTTGGACATGTTGAGTTTGCAACAGCAGCGGCTGCTCAAAAGGCCCTTGGATTGAATGGACAACAATTGTTTAATCGTGAACTCCGACTTGATTTAGCTCGGGAAAGGGGTGCATATACCCCCAACAGCAGCAACTGGAACAACTCATCCCAGAAAAGTGGAAGAGGCCAGTCTCAAACAGTATTTGTAAGGGGTTTCGATACATCCCTTGGAGAAGATGAGATACGAGGGAGTTTGCAAGAACATTTTGGATCTTGTGGGGACATTACCAGGGTGTCGATTCCTAAAGATTATGAGTCTGGTGCTGTCAAGGGGTTTGCTTACGTAGACTTCAGTGACGTTGATAGCATGGGCAAAGCTCTAGAACTCCATGAAACTGAACTTGGAGGTTATACCTTAACAGTGGATGAAGCCAAACCTAGAGATAATCAGGGTTCTGGTGGTAGAGGTGCCGGTGGAAGGAGTGGTGGCGGTCGATTTGGTGGTAGGAGTGGTGGTGGTGGTGGTGGTCGATTTGGTGGAAGAGGTGGTGGCGGTCGATTTGGTGGAAGTGGTGGTGGTGGTCGATTTGGTGGAAGTGGTGGTGGTGGTCGATTTGGTGGAAGAGGTGGCGGTGGAAGGGGTCGTGGAAATAGACCCAACCTTGCTGCGGAAGGCACAGGGAAAAAGACCAAATTTGCTGATGACGAGTAG 2238 0.4526 MGKSSKKSALKVDAVPAVVPPSKSAKKGGKRQAQDEIEKQLSAKKQKINEVAQKQKEAKVQKKESSSDDSSSESEDEKPAPKSAVLSKKIPAKNGAAPPKKGKLASSSSEDDSSDEDGVRAKKPQKMVAEKQKNGATVQKKKVESSSDDSSSESEAEKPAVKATVPSKKTPTKNGNLSTPAKKGKAASSSSSSDSSEDDSSDEDEVATKKQTKEVKVQKGKEESSSDDSSSESEDEKPAAKVAVPPKNQSAKNGTLSTPAEKGKPAASSSSSESSDDDSDEDEAPKSKVAPAAGKNVPASTKITQPSESSESDSDSSSDEDKNKKKPATAKLPALSVAPALKVESSDDESSESSDEDNDAKPAVTDVSKPSALAKKKVDSSDSDDSSSDEDKGKMDIDDDSSDESEEPQKKKTVKNPKESSDSSEEDSEDESEEEPSKTPQKRDRDVEMVDAASSGKKAPKTPVTPKEETGASKTLFVGNLPFSVERADVEDFFKDAGEVVDVRFATDDTGKFKGFGHVEFATAAAAQKALGLNGQQLFNRELRLDLARERGAYTPNSSNWNNSSQKSGRGQSQTVFVRGFDTSLGEDEIRGSLQEHFGSCGDITRVSIPKDYESGAVKGFAYVDFSDVDSMGKALELHETELGGYTLTVDEAKPRDNQGSGGRGAGGRSGGGRFGGRSGGGGGGRFGGRGGGGRFGGSGGGGRFGGSGGGGRFGGRGGGGRGRGNRPNLAAEGTGKKTKFADDE* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0233 745 MobiDBLite consensus disorder prediction 105 156 - -
Gso12g0233 745 MobiDBLite consensus disorder prediction 298 312 - -
Gso12g0233 745 SUPERFAMILY RNA-binding domain, RBD 561 685 IPR035979 GO:0003676
Gso12g0233 745 MobiDBLite consensus disorder prediction 248 273 - -
Gso12g0233 745 MobiDBLite consensus disorder prediction 167 195 - -
Gso12g0233 745 Gene3D - 464 555 IPR012677 -
Gso12g0233 745 MobiDBLite consensus disorder prediction 372 422 - -
Gso12g0233 745 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 576 648 IPR000504 GO:0003723
Gso12g0233 745 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 544 IPR000504 GO:0003723
Gso12g0233 745 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 307 678 - -
Gso12g0233 745 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 550 IPR000504 GO:0003723
Gso12g0233 745 Coils Coil 30 64 - -
Gso12g0233 745 MobiDBLite consensus disorder prediction 1 471 - -
Gso12g0233 745 MobiDBLite consensus disorder prediction 435 452 - -
Gso12g0233 745 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 574 655 IPR000504 GO:0003723
Gso12g0233 745 MobiDBLite consensus disorder prediction 203 241 - -
Gso12g0233 745 CDD RRM2_NUCLs 575 653 IPR034350 -
Gso12g0233 745 SMART rrm1_1 575 651 IPR000504 GO:0003723
Gso12g0233 745 SMART rrm1_1 475 546 IPR000504 GO:0003723
Gso12g0233 745 MobiDBLite consensus disorder prediction 28 83 - -
Gso12g0233 745 Gene3D - 556 673 IPR012677 -
Gso12g0233 745 MobiDBLite consensus disorder prediction 647 745 - -
Gso12g0233 745 SUPERFAMILY RNA-binding domain, RBD 465 571 IPR035979 GO:0003676
Gso12g0233 745 PANTHER BNAA08G02930D PROTEIN 307 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0233 Gso-Chr12 1975754 1981392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0233 476 654 Eukaryotic Initiation Factors Gene Family AT1G22760 27.128 9.14e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0233 K11294 - gmx:100779929 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0233 12 1975754 1981392 Gso11g0862 11 7699931 7705692 GST