Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0230 ATGGCAAATGATGGTACAGTGTCTGAAACAAAGTGTACCCATGACGTATTCCTTAGTTTTAGGAGAGATGATACCCATCACACTTTTACTTGTAAACTCTATGATTCTTTGTGCCGGAAGGGAATTATCACCTTCATGGACAATGAGGAGCTCAAAGTTGGAGATCAAATTGGTCATAAGCTTCTAAAAGCCATTGAAGAATCAAGGATCTCGATTGTTGTTTTGTCTGAAAATTATGCAGCCTCTTCATGGTGCCTTGATGAACTTGTGAAGATCCACGAGTGTATGAAGGCAAAAAACCTGCTCGTTTGGCCCATCTTCTACAAAGTGGATCCCTCAGATGTGAGGCACCAGAATGGAAGTTATGGTGAGGCCATGACTGAGCATGAAACACGGTTTGGGAAAGACTCAGAGAAGGTGCACAAATGGAGGTTAACCTTGACTGACATGACCAACTTGAAAGGAGAACATGTGCAAGAAGGGAGGGACGAATCCAAGTTTATCGATGATCTTGTTAGCAGGATTTTCATTAAGGTGTCTCCTAAAGATTTATCTAGGAATGAGCATATAGTTGGATGGGAGTATCGAGTTGAAGAATTAAAGTCACTTCTAGAACTTGAGTCTCATAATATCACTAATTGTCTGCTAGGGATTCATGGAACCGGTGGAATTGGCAAAACCACACTTGTCAAAGCTTTGTATGACTCCATTTACAAACAATTTCAGGGTTCGTGTTTTCTCTCCAACTTTAGAGAAAATTCAAGTCAAATTCAGGGCATAAAACATCTGCAAGAAGGGCATCTATCAGAGATACTTGAGGGAAGCAAAATCCTGTTGAAAAATATTGAAAAAGGAATAGGAACAATAACAAGTAGACTTCGTCTCAAAAGAGTTGTTATAGTTGTCGATGATGTTGATGACATTGAAGAGTTAAAAAAGTTGGCTGAGGAACTTGATCGGTTTGGTCCTGGGAGCAGGATCATCATAACAACGAGAAATAAATATTTGCTAGATGTTGGTCAGGTCGAAAAAAAATATGAAGTGAAGATGCTAAACGACCAAGAGTCTTTGGAGCTCTTTTGCCAGAGTGCCTTTAGAAAGAGTTGTCCTGAAACAAACTATGAAGACCTGTCCAATCGTGCAATAAGGTGTTGCAAAGGCCTTCCATTGGCCTTAAAAGTACTAGGTTCTCATATGGTTGGAAAAGATTTGGGTGGATGGAAGGATGCATTGGATAGATATGGAAAGAGTCAACATGAAGGTGTTCAAAAAGTTCTAAGAATAAGCTATGATAGCTTGCCCTTCAATGAGAAGAATATTTTTCTTGACATTGCATGCTTCTTCAACGGATGGAAATTGGAATATGTAAAAAGTGTACTGGATGCATGTGACTTCAGCTCAGGTGATGGTATTACAACATTAGTTAATAAATCACTTTTAACTGTTGACAACGAGTGCTTGGGGATGCATGACCTAATACAAGAAATGGGTAGAGAGATTGTTAAGGAGGAAGCAGGTGATGTAGTTGGTGAATGCAGCAGATTATGGCATCATGAAGATGTTTTTCAAGTACTAGTTAATGATACTGGAAGTAGCAAAATTCAGGGAATAATGCTTGATCCCCCTCTAAGAGAAGAAATTGAATGTACTGATATTGTATTTAAGAAGATGAAGAATCTTAGGATTCTCATTGTTCGCCAAACAATATTTTCATGTGAGCCTTGTTATCTCCCAAATAACTTAAGGGTACTAGAATGGACAGAGTACCCTTCACAGTCTTTCCCGTCAGATTTTTATCCCAGTAAACTTGTGAGGTTCAATTTATCTGGAAGCAATCTACTCGTACTGGAAAATCCATTTCAGAGATTTGAGCATTTGACTTACATGGAAATCTCCCATTGTCGTACGGTTGTTGAATTTCCTGATGTCTCTCGGGCCAAGAATTTAAGAGAATTAAGACTTGATAGATGCCAGAAACTGGTTAGCATTCATAAATCAGTTGGACGTCTTGCTAACCTTGTTTTTCTAAGTGCTACACACTGCAATCAACTCCAAAGTTTTGTTCCAACAATCTATTTGCCATCTCTCGAATACCTTTCCTTTGGCTATTGCTCAAGACTCGCACACTTCCCAGAGATTGAGAGAACAATGGATAAGCCATTAAGGATTCAAATGTTATATACAGCTATCCAGGAGCTTCCAGAATCCATTAAGAAACTTACTGGGCTTAACTATCTTCACATTGAAGGTTGTAAGGGACTCCAACATTTACCAAGTAGCTTATTTGTGTTGCCAAATTTTGTCACATTAAGAATTGGAGGTTGTTATCTACTTCGAGAGTCATTTAGAAGGTTCGAAGGAAGCCATTCAGCTTGCCCAAAACTAGAGACATTACACTTCGGTATGGCTGATCTATCAGACGAAGATATTCACGCGATTATTTACAATTTTCCAAACTTGAAACACTTAGATGTATCGTTCAACCATTTTGTGTCTCTCCCAGCACACATTAAACAATCTACTAAGTTGACAAGTCTTAACGTGAGTTATTGTGATAAGCTTCAAGAAATTCCAGAACTTCCATCAACTGTTCAGAAAGTATATGCAAGCGAATGCAAATCCTTAACTCCCGAAACATCAAACATCTTATGGTCTCAGGTGCGTAAAGAGATTAGGGGATTAGAAGTGAGGATGCCGAAAAGGGAGATTCCAGAATGGTTCGACTATGTTAATGAGGGAGGGTATCCAGTTTTCAAGGCTCGTGGGAAGTTCCCTGCAGTTGCTTTAGCGTTTGTATTCGGGGACGTGAAGGCCCTTCCTTTCCTCTCGTCGATGGGAGTTCACTTGCACTTGTTCATTGAGGGTGAACACAGACTGTGCGATAGATTCATAGTGGTCAAGAATCAAGCGTTGTTGTGTGACATACGAGTTTTGTTCAGTTTCGAGAAGTGGGAGGATGTAGGTGTTGGAATTGGTAATGATTGGAAGACCATACAGGTTTTCTGTGAAACAGGCTGCAACTCTCTACGTTCATGGGGAGTTTATGTGTACAGGCATGAGACTAACATGGAGGATATCCAATTCTTGAGTCAACATTCTATTTCCTCTTTGGTGAGGAGTCTTCACGAAGAACGTAAGAAATCAGACCAAAGTTTGAAAGGGCGAGAGATGTTTCATTTGCAAATGAGAAATAATGAAGAGATGTTTTATTGCATGCATAAGCAAAGAAGGCGAGAGTTGCTGCTAATCTCAGAAAAAACATCAAGGAGGGCTATGGCTCCAAGAGAGGGGGAAGGTAGTTCAGGGTTGAACATCGATGACAAGGAGGACAAGGAGGCTGATTCAATGTTGGAGTTGTTAGCAGAGATTACAAGTGATGATGGAGAAGAGACTCAAGAAGCTGGTCCTTCAAGCGAACAACGATATGAAGGACTTCTGGATGAACATTCAAGATCAGCATGCAGGTCTGGAAAAAAGCTCAGAAGATGTTGA 3492 0.3998 MANDGTVSETKCTHDVFLSFRRDDTHHTFTCKLYDSLCRKGIITFMDNEELKVGDQIGHKLLKAIEESRISIVVLSENYAASSWCLDELVKIHECMKAKNLLVWPIFYKVDPSDVRHQNGSYGEAMTEHETRFGKDSEKVHKWRLTLTDMTNLKGEHVQEGRDESKFIDDLVSRIFIKVSPKDLSRNEHIVGWEYRVEELKSLLELESHNITNCLLGIHGTGGIGKTTLVKALYDSIYKQFQGSCFLSNFRENSSQIQGIKHLQEGHLSEILEGSKILLKNIEKGIGTITSRLRLKRVVIVVDDVDDIEELKKLAEELDRFGPGSRIIITTRNKYLLDVGQVEKKYEVKMLNDQESLELFCQSAFRKSCPETNYEDLSNRAIRCCKGLPLALKVLGSHMVGKDLGGWKDALDRYGKSQHEGVQKVLRISYDSLPFNEKNIFLDIACFFNGWKLEYVKSVLDACDFSSGDGITTLVNKSLLTVDNECLGMHDLIQEMGREIVKEEAGDVVGECSRLWHHEDVFQVLVNDTGSSKIQGIMLDPPLREEIECTDIVFKKMKNLRILIVRQTIFSCEPCYLPNNLRVLEWTEYPSQSFPSDFYPSKLVRFNLSGSNLLVLENPFQRFEHLTYMEISHCRTVVEFPDVSRAKNLRELRLDRCQKLVSIHKSVGRLANLVFLSATHCNQLQSFVPTIYLPSLEYLSFGYCSRLAHFPEIERTMDKPLRIQMLYTAIQELPESIKKLTGLNYLHIEGCKGLQHLPSSLFVLPNFVTLRIGGCYLLRESFRRFEGSHSACPKLETLHFGMADLSDEDIHAIIYNFPNLKHLDVSFNHFVSLPAHIKQSTKLTSLNVSYCDKLQEIPELPSTVQKVYASECKSLTPETSNILWSQVRKEIRGLEVRMPKREIPEWFDYVNEGGYPVFKARGKFPAVALAFVFGDVKALPFLSSMGVHLHLFIEGEHRLCDRFIVVKNQALLCDIRVLFSFEKWEDVGVGIGNDWKTIQVFCETGCNSLRSWGVYVYRHETNMEDIQFLSQHSISSLVRSLHEERKKSDQSLKGREMFHLQMRNNEEMFYCMHKQRRRELLLISEKTSRRAMAPREGEGSSGLNIDDKEDKEADSMLELLAEITSDDGEETQEAGPSSEQRYEGLLDEHSRSACRSGKKLRRC* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0230 1163 MobiDBLite consensus disorder prediction 1087 1163 - -
Gso12g0230 1163 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 155 IPR035897 -
Gso12g0230 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 444 IPR027417 -
Gso12g0230 1163 SUPERFAMILY L domain-like 489 868 - -
Gso12g0230 1163 MobiDBLite consensus disorder prediction 1101 1117 - -
Gso12g0230 1163 Gene3D - 11 183 IPR035897 -
Gso12g0230 1163 Gene3D Ribonuclease Inhibitor 545 722 IPR032675 -
Gso12g0230 1163 Gene3D Ribonuclease Inhibitor 723 886 IPR032675 -
Gso12g0230 1163 SMART till_3 13 153 IPR000157 GO:0007165
Gso12g0230 1163 Pfam TIR domain 14 186 IPR000157 GO:0007165
Gso12g0230 1163 Gene3D - 350 434 IPR042197 -
Gso12g0230 1163 Pfam NB-ARC domain 194 432 IPR002182 GO:0043531
Gso12g0230 1163 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 1030 IPR044974 GO:0006952
Gso12g0230 1163 PRINTS Disease resistance protein signature 215 230 - -
Gso12g0230 1163 PRINTS Disease resistance protein signature 292 306 - -
Gso12g0230 1163 PRINTS Disease resistance protein signature 385 399 - -
Gso12g0230 1163 PRINTS Disease resistance protein signature 644 660 - -
Gso12g0230 1163 Gene3D - 184 348 IPR027417 -
Gso12g0230 1163 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Gso12g0230 1163 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0230 Gso-Chr12 1949462 1954693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0230 14 824 WRKY Transcription Factor Family AT4G12020 31.966 5.77e-99 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0230 - - gmx:100801890 2326.98