Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0229 ATGGAGAAGGAGGACGAGACAACTCATGAGGATGATTGGATCAAGGGAGTTGAGATGAATTCTATCGATCATAAGATTACATCCAAGGAGCAACAACACTACACCGTTTTGAGTGAATCCGACATCAAGCGACATCAAGATGCAGACATTAAACAGGTTTCATGTGTTTTATTGATATCAATAGTGTTTTCTTGTCTTTTGCTCGTCCACCACGAGTGGAGTGTGCTCAAAGTGCAGGAAGTATGGTTCGATGATGAAGAAAGAGTTCGCAAAGCCGTAGGGTTACTAAAGCAGCATAAGCCTCGGGTAGGTTTTCCCAACTCAAAAACCCTCACTTGTGAGATATGTCTCGATGTTGTTTTATGCGATAAGGTTAGATCAGCTAGTTGTGATCATCTATATTGCATTGATTGTTGGAAGAAGTATGTGGATACAAGCATCAACGACGGCCCTAATAAGTGCTTGAAACTTAGGTGCCCTCAACCCTTTTGTGATGCAGCTGTGGGTGGAGACATGATTCGTGAACTTGCAAGTGAGTCACAGCGGAACAAGTATGATCAGTTTTTGTTTCGATCTTATGTGGAAAACAACAAGAAGGTAAAGTGGTGTCCTGCCCCAGATTGTGGGTATGCTGTGAGTTATGAAGCAGATGGTGTGAGATCCAATTCAGATGTTACTTGTCTTTGTTATCACTCCTTTTGTTGGAGTTGTGGGGAAGAAGCTCATAGCCCTGTGGATTGTGAAATCGCGAAACACTGGATCATGAAGAATGATTATGAATCCTCTGAGAATTCTGCTTGGATTCTTGCTAATACCAAACCATGTCCTAAGTGCAAGAAACCTATTGAGAAAATTGATGGGTATGTGCATATGGAGTGCATGTGTGGGTTCCAGTTTTGCTGGTTATGTCTTCGCAAATGGTCCAATTGTTGTTATAACTGCATCCATTTTCCTTACAAGGATATTTACAAGAAGGAAGTGAAGAGAAATATGGTGAGTGATTATTTGGATGATTGCACTCATTATTTTGAGTCTTGGACTAGAACAAATTTGATAAGAAAAGATGCACTTAATCATTTAAAGCACCTGATGAATGGTGGGCATACAAAGCGATTGAGTATGTTATATCAAAGGTCAGAAGATGATTTTGAGTTCATAGAGGCGGCGTGGCAACAAGTGATTGAATGTATAAGAGTGCTCAAATGGATCTATACATATAGATTCTATCTTCCTAAAAGCGAACAAGCTAAAATAGAATTTCTTGGGTACTCACAACGCGAGGCTAAAACTGTTTTGGAAACGCTTTGTTATTGCACAGACAAGGAATTGAGCGAGTTTCTTCATGCTAGTGAGCCAAAAAATACATTTGATGATTTCCGATTGAAGTTAATGAAACTTACCAATGTCAGTAAGACATATTTTGAGAATCTAGTGAGAGCCTTAGAGAATGGGCTAACTAATGTCCAAGTGAAAAAGTATGGAGTCAGTGGACTAAAAAGAAGGCTAAGGGAGATAGGGGAGAGCTCAACTGGAATGAAAAAGAGAAACAGGAATATCAACCTTAATTAA 1569 0.3964 MEKEDETTHEDDWIKGVEMNSIDHKITSKEQQHYTVLSESDIKRHQDADIKQVSCVLLISIVFSCLLLVHHEWSVLKVQEVWFDDEERVRKAVGLLKQHKPRVGFPNSKTLTCEICLDVVLCDKVRSASCDHLYCIDCWKKYVDTSINDGPNKCLKLRCPQPFCDAAVGGDMIRELASESQRNKYDQFLFRSYVENNKKVKWCPAPDCGYAVSYEADGVRSNSDVTCLCYHSFCWSCGEEAHSPVDCEIAKHWIMKNDYESSENSAWILANTKPCPKCKKPIEKIDGYVHMECMCGFQFCWLCLRKWSNCCYNCIHFPYKDIYKKEVKRNMVSDYLDDCTHYFESWTRTNLIRKDALNHLKHLMNGGHTKRLSMLYQRSEDDFEFIEAAWQQVIECIRVLKWIYTYRFYLPKSEQAKIEFLGYSQREAKTVLETLCYCTDKELSEFLHASEPKNTFDDFRLKLMKLTNVSKTYFENLVRALENGLTNVQVKKYGVSGLKRRLREIGESSTGMKKRNRNINLN* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0229 522 ProSiteProfiles TRIAD supradomain profile. 109 320 IPR044066 -
Gso12g0229 522 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 31 504 - -
Gso12g0229 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 198 IPR013083 -
Gso12g0229 522 SMART ibrneu5 183 247 IPR002867 -
Gso12g0229 522 SMART ibrneu5 257 314 IPR002867 -
Gso12g0229 522 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 504 IPR031127 GO:0004842|GO:0016567
Gso12g0229 522 Pfam IBR domain, a half RING-finger domain 183 247 IPR002867 -
Gso12g0229 522 SUPERFAMILY RING/U-box 107 192 - -
Gso12g0229 522 SUPERFAMILY RING/U-box 184 254 - -
Gso12g0229 522 Gene3D - 243 488 - -
Gso12g0229 522 SUPERFAMILY RING/U-box 267 314 - -
Gso12g0229 522 ProSiteProfiles Zinc finger RING-type profile. 113 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0229 Gso-Chr12 1943121 1944957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0229 26 488 ARIADNE family AT1G65430 48.421 2.18e-147 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0229 K11968 - gmx:100801350 1095.11