Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0209 ATGGATTGTACAGCTGCAAGGAAAACACAAAAGGCTGACCGAGAAAAGCTAAGGAGGGATCGATTCAATGTACAGTTTGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAATTGCTAAAGGACCTTACTTCTGAAGTCAGTAAACTTAAAGATGAATATGCTACTCTAAATGAAGAATCTTGTGAGTTGGCTCAGGAGAAAAATGAACTCAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTTTGAAGTTGAATAATCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAACGGATCATTCAATAATGCTAGCTCCACCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTGCTCCTATTGCCATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCAATCATCCCTAACCCTTGTTCAACATTTGTTCCTTATTTAGTCCCCAATACCCTTACTGAACAGCGATCCACCCAGTACATGTCGCCACCTGTTCATCCAGGTTTTCGGTCCCATGTGTCAGGAAAACAAGAGTCCAGAAACAAATCATCCAAGGAGAGCAAGGCTGAAAAACATGAGGATTCTAATGATGTCACTCTGACTCCTGGGTCTTCTGCTGATCAGGATTTATCATCTGGACAAAGAAAATCTAGCAAGTTGTCAAGGAAGGAAAGCAGTTGCACTGAAGTGAGTTCTTTAGATAGGTGCTCTTTGTCTTGTAGCGTTCAGGATAGTTCATCAAGTAGTGTAGTTCACAAGCACAAAGGCTAA 828 0.4179 MDCTAARKTQKADREKLRRDRFNVQFVELGNILDPDRPKNDKATILGDTIQLLKDLTSEVSKLKDEYATLNEESCELAQEKNELREEKASLKSDILKLNNQYQQQLRTVSPWTATDHSIMLAPPSYPYPVPMPIPPAPIAMQPYPFYANQHSAIIPNPCSTFVPYLVPNTLTEQRSTQYMSPPVHPGFRSHVSGKQESRNKSSKESKAEKHEDSNDVTLTPGSSADQDLSSGQRKSSKLSRKESSCTEVSSLDRCSLSCSVQDSSSSSVVHKHKG* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0209 275 PANTHER TRANSCRIPTION FACTOR BHLH121 1 274 - -
Gso12g0209 275 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Gso12g0209 275 Gene3D - 5 89 IPR036638 GO:0046983
Gso12g0209 275 PANTHER TRANSCRIPTION FACTOR BHLH121 1 274 IPR044579 GO:0003700|GO:0055072
Gso12g0209 275 MobiDBLite consensus disorder prediction 192 216 - -
Gso12g0209 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 74 IPR036638 GO:0046983
Gso12g0209 275 CDD bHLH_AtILR3_like 11 85 - -
Gso12g0209 275 MobiDBLite consensus disorder prediction 217 234 - -
Gso12g0209 275 SMART finulus 12 62 IPR011598 GO:0046983
Gso12g0209 275 Coils Coil 46 108 - -
Gso12g0209 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Gso12g0209 275 MobiDBLite consensus disorder prediction 176 275 - -
Gso12g0209 275 MobiDBLite consensus disorder prediction 243 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0209 Gso-Chr12 1768250 1773036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0209 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 55.556 1.00e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g0209 HLH 8.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0209 - - gmx:100817000 454.521