Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0197 ATGGCAACCATGGAAGACATGAACAACATGAGTGGTGAAATTACACTTCCAGGCTTCCGATTCCACCCAACTGAAGAAGAGCTTCTTGATTTCTACCTTAAAAACATGGTTGTTGGCAAGAAACTTCGTTACGATGTCATTGGTTTCCTCAACATCTATCAGCATGATCCATGGGACTTGCCTGGTTTGGCAAAGGTTGGGGAAAGAGAGTGGTACTTCTTCGTGCCAAGGGACAAAAAGCACGGAAGCGGTGGAAGGCCAAACCGCACAACTGAAAAAGGGTTCTGGAAAGCCACCGGTTCAGACCGGAAAATAGTGACCTTATCTGATCCAAAGCGCATAATTGGGTTAAGGAAGACACTGGTTTTCTATCAGGGAAGAGCTCCTAGGGGATGCAAGACCGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGCAAACTACCTAAGGAAATCGTGTTATGCAAGATATATCGAAAGGCAACTTCGTTGAAAGTGCTGGAGCAAAGGGCAGCACTAGAGGAAGAGAGAGAGATGAAGCAAATGGTTGGTTCCCCTGCTTCTCCTTCCTCCACGGACACCATGTCCTTTAGCAGCCCACAGGAAGAGCAAAACATGCCCTTGCCATTGTTGCAACATGTTCTTAAGAAAGAGTCTGAAACTGAAGACATGGTAGTGCCTAAACAAGAAAAAATAACCAACCAATTGGTCTTAAAAGACACCAACAAAAGCACTTGTGGCACATCACTACAAATGCCCTTTGGGAAGGAGAAGCTTCCAGACCTTCAGCTTCCCATGCTCTCGGATTGGACCCAAGATACCTTTTGGGCTCAGTTGAATAGTCCATGGCTCCAAAACTTTACTCCCACCAATATTCTAAACTTCTACTGA 894 0.453 MATMEDMNNMSGEITLPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYQHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYQGRAPRGCKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEQRAALEEEREMKQMVGSPASPSSTDTMSFSSPQEEQNMPLPLLQHVLKKESETEDMVVPKQEKITNQLVLKDTNKSTCGTSLQMPFGKEKLPDLQLPMLSDWTQDTFWAQLNSPWLQNFTPTNILNFY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0197 297 ProSiteProfiles NAC domain profile. 15 161 IPR003441 GO:0003677|GO:0006355
Gso12g0197 297 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 9 296 - -
Gso12g0197 297 Gene3D NAC domain 24 165 IPR036093 GO:0003677|GO:0006355
Gso12g0197 297 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 296 - -
Gso12g0197 297 MobiDBLite consensus disorder prediction 178 204 - -
Gso12g0197 297 SUPERFAMILY NAC domain 14 161 IPR036093 GO:0003677|GO:0006355
Gso12g0197 297 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Gso12g0197 297 MobiDBLite consensus disorder prediction 185 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0197 Gso-Chr12 1666342 1668672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0197 10 297 NAC Transcription Factor Family AT2G17040 59.794 4.50e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g0197 NAM 7.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0197 - - gmx:732555 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0197 12 1666342 1668672 Gso11g0822 11 7398583 7400715 GST