Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0190 ATGGAGTTCGTGGGAAAAACAGTTAGGAAAGAGGTGAAGGGGGTTGGGTTTATCTCTGGAACAGTGAAATCCTACGACCCTTCCTCTGGTTTTTTCGAGATCGTTTACGAGGATGGTGATTCTGAGGAATTGGAGTCTTCTGAGGTGGCTTCTCTTCTGCAATTTCAACCGGAGAGTGTCAAGGCCAAGCCTCGGGTTGGTCGGAAACCTAAGAAGCGCCGCCGTGTCGAGCAGAAGCCGGATGCTGGATCCCGTTCAGGTAATGTTAGCGAGAATTTGGTGGAGGATGGTAGTGACTTTAGGGGGGATTTGGATGGGAATGTTTCTTCTGCTGGTGGTGGGGATTTGGATTTAGGATGTGCGGGGATTGATAGAGCCATTGATGTCGATGTTGGGAATGGAGGGAATTCTATTGTCAATGTTAATGGGAGTGTGAAGGAAAACGGGGGTGGAGAGGACATTGGTTTTGAGGATAGTTTGAACAAGAGTGTCGATGCTAATGGTAGTTGTGTCAAGGATGCGCTTGATTTGAATGCTAGGCTTAATCTCAATGAGGATTTTAATCTGAATGATGCTTGTACTTTGCCTCTTGACACTGAGGATGGTTTTAATAGAAGAGATTGTATTGATTTGAATTTGGATGTAAATAATGAGGATGATGTCGGCGTGAATGTGGGTTACCTGGGTTGTTCTGGTGGGGAGGTGTTGCAGCGGGAATGTAATTTTGATTTGAATGTCGAGGCATGTGAGGAAGGTAGGGAAACTCGGTGTGATGATGACGGAAATGGACATTCTGAGGTGGGTGATGCTTTGTTTAGTAGGATGGGGCAGCTCCAAAAGGAAGAAGAGGTAAATGTTAATAATAGTTCTGAAGAAAATGAAGGTGTTAACGGTAATTTGAATCATGTCTCTGATGCTGTCAAATTGGAGGGAATTCATGTTTCTGCTGCCCATGCAGCTAAAGATGGTTCTTTGTGTTTGGTTGAGGAAAATGGAGGTGATGATGGCAAAGATGTGGCAGCTATTGATTCTCATCAGATTTCAAATGCAATTTCGGTTAGGGATTCTGATTCTGTGGAGGCTCAGCGAGTTGATTGGCCTTCTGAAGGTGGTGTTGCCGTAATTCATGAACTCCAAGATGATCCAGGAAGTCCGTGTAAACAAGGAAATGGCCGAAGGAAAAGAAGAAAAGTATCAGATAATCCACAAGCCACGCCAGAGACAGTTTTAAGGAGGAGTTCTCGTCGGGCATCAGCTAGAAAACGGGTTTCAAGCACCATACTAGTGGAGGTGACTGATGATCCTTTGATGTCCTTGGAAACCAGTGCCTTAACAGGAGAAAAGCCTCTAATCTCCAATTCTCAGAAATATGAACAATGCAGTGATCCTCTTCCAAAGCTGCAATTTCCCCCGTCTTCTACAAATTTGAATTTAGATGGCGTTCCTGTTCTTGAACTCTTTTCTATTTATGCTTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCCCTGAAGTCTGAAATCCCAAGTATATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGAATTTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCATCCAATTGCCTTAGGAATCTTAGCTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCCGAGTACCTTCTGATTCATGGCTCAGGATTTAAAACTGGTTTTGATCTTAAACATCTAATGTTCAAAACTGATTACTACAAACAACCTGTAACTGCAAAGGTTGAGATTCTTCAGTATCTATGTAATGATATGATTGAATCGGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGACTGATGTGGGCTTTGATCAGAATATGTATTTTGACACTGGCAAGAAAAAGAGAGCTGTAATGGATGTGTCTGGTGGCTCTTGCTTGACTGAGGAGAATGTGGATGATACAACTGACTGGAACAGTGATGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCAGCATTCCACTCAAGATGTGTGGGAATTGCCAGTGACCATCTCCCTGAAGGTGACTGGTATTGCCCCGAGTGTGTAATTGGCAAACACATGGCTTGGATGAAATCACGAAGATCACTTCGAGGAGCAGACTTATTAGGGATGGATCTGGATGGCCGTCTCTATTTTAACAGCTGTGGTTACCTGTTAGTGTCAAACTCATCTGAAGCAGGGTCATTGTTCAATTATTACCACAGAAATGATCTACATGTAGTAATTGAAGCTCTAAAATCTATGGATCCTTTATATGAAGGCATACTAATGACTATCTATAAGCATTGGGATATCAGTGCTAACTTGAGTGTGGGGGATAGTGTCTTTAATCGGGCTAATGATCAAAGAAAGTTGGACGAAAATTCAACTATTGACAGTTGTATGCATCTTGTCCAAGAGTTTCCAAAAGCTGGGAACCGCCTAGACTCAACGACCACCATAGAAAGTCCTTGTGTTGCTTCAGATGGATCAGCTGATACCACACAGACTAGAACAGGCATCGACAATGTTCAGATAAATGGGCTCAATGATTCCAATAGATGTGATGAATCCTTGAATCAGCCAGGAATACCAGAAAGATGCCATCCTGTTGGTGACTGTTCTTTGACATCTTCCAGCTTAGATGTGGGACGTAAAATAAACTTAAGATCTGTAGGTTCTAGTATTACCCCCTCCATGGACAATAAGGATACTTCAGAAGTACCTCGTGGAATTGACTACATAAACTATTACAGCTTTGCCCGAACAGCTTCATTTGTAGCACAGGAGTTGATGTGTAAGTCACCTGAAAAGATGAATAAGATTTTTGCAATGTCTGAAGAAGAAGTTATGTCAGACCAAGCAAAGGTCATTACGAAGAAATCTACTAACTTTTGCTGGCCAAGTATTCAGAACCTGAATGCAGCTGCCCACAAGGAAAAATGTGGGTGGTGCTTCACTTGCAAAGGTGAAAATGAAGACAGGGATTGCTTGTTTAATTCTGTGGTGAAGCCTGTTTGGGAAGTGCCTAATAATATTTTAGTTGGGCTTCAACCCAGGAAGATCCAGAATGGACGTCTTAGAGATATCATATGTCTTATCTTCTCTCTTGAGGTTCGATTACGTGGGCTTTTGTTGGGTCCATGGTTGAATCTGCATCAAACTAATCTTTGGCATAAGGATCTTTTGAAGACATCTGATTTTTTTCCTGTTAAACGATTATTGCTTCTTTTAGAATCCAATTTGTGCCTTCTTGCACTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTGCTACAATGGGATCTGCTACACATATTGTGGTCAGTTCATCACGCACATCTTCAAGGCATGGTATTGGAAGGAAAAGGGCCAGGAACTCAGATATTGAAACCAGTTCATCTTCAAACACTGCTAGTGGTTTGGGAATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTGTAAGGCTTTGCCTCATTCCCTGGTTACCAAGGCTGCTAGACAAGGTGGGTGTAGGAAGATACCAGGCATTTTATATCCTGAGAATTCAGATTTTGCACGGAGAAGCAGATTTGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGCTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCATGATATTGAGAACAACTATTCCCTATATGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAATCAATCGTACGCAGGAAGTGCACTGAAGGGGGATCTGTGAAATTCCTTATTGATTTTGGGAAGAGAAGGGCTATTCCAGATGTTGTTATTAAACATGGTTCTTTGTTAGAACAATCTGCTAGTGAGAGAAAAAAATATTGGCTGGAGGAGTCTTATGTTCCATTGCATCTTCTAAAGAATTTTGAAGAAAAAAGAATTGTCCGCAAGTCCACTGATAAGAAACTTGGAAAAATTCTTGAGATTGGTAGAGTAAACAAGAAAATTCCTCAACAAAGGGGATTTTCATATTTGTTTACCAGATTGGAAAGATCTGATTGTCATCAGTGCAGGCACTGCAACAAAGATGTTGCAATGAGGGATGCTGTGAGGTGCCTTCATTGCAAAGGATATTTCCACAAGAGACATGCAAGGAAATCAGGTGGCAAAAGAACTACTGGAAGCTCTTATTCATGTCACAGATGTCAAGATGGGTTGCATGCAAAGACTAATACTAATAAAAGGAAAGTTGACTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAACTGTGCCTTCAGTTTGTAAACCAGTGAATCTCAAGGGCAATAAAAAGGCATTGAGTAATAATAAGATACGACAGGCGAGATCTCGAAACAGTAAGAATATCCCATCAAGTATACCTCTTCGCCGTTCTACTAGGAAGGCCAAATCCTTGTATATGCAAAGTCAATTGAATGGAGGACATAAAAAAGGAAAAAAGAATGTGGGACGTAAAAAGGGAAAGCAAGGTAAAACCAAGAAGGTGATTCCTCAAAAGTCCAAAGAAACTACTGGTCAATATAAGAAGTCGGAAGTTACTACTGCACGTAAGAAGAGAACAAAAATCTGTAACAGTTATTGGCTTAATGGTCTTCAGTTGTCTAGAAAGCCAAATGATGAACGAGTAATGCTGTTTAAAGAGAAAAAGCGTGTTGCCTCCTCTAAAGATTTCTCTGGCTCTCTTGATCATCCTAAATGCTGCCTTTGTTGTGGAAATGAATGCACCTTGAATTATATTGCGTGTGAAATCTGTGGAGATTGGTTTCATGGTGATGCTTTTGGCCTCAATGTGGAGAATGCCAGACAACTTATTGGATTTAAGTGCCATGTTTGTCTTGATAGAACTGCTCCAATCTGTCCCCATTTGAAGGTTAATGCATTGTCTTGCACTGAAAGCAATGCTGCAATTGAGTGTGGAGAGGAGTTATCCAATCCTGTTTCTCTCCAACCTTTAAGTGAGGTTTGA 5109 0.4134 MEFVGKTVRKEVKGVGFISGTVKSYDPSSGFFEIVYEDGDSEELESSEVASLLQFQPESVKAKPRVGRKPKKRRRVEQKPDAGSRSGNVSENLVEDGSDFRGDLDGNVSSAGGGDLDLGCAGIDRAIDVDVGNGGNSIVNVNGSVKENGGGEDIGFEDSLNKSVDANGSCVKDALDLNARLNLNEDFNLNDACTLPLDTEDGFNRRDCIDLNLDVNNEDDVGVNVGYLGCSGGEVLQRECNFDLNVEACEEGRETRCDDDGNGHSEVGDALFSRMGQLQKEEEVNVNNSSEENEGVNGNLNHVSDAVKLEGIHVSAAHAAKDGSLCLVEENGGDDGKDVAAIDSHQISNAISVRDSDSVEAQRVDWPSEGGVAVIHELQDDPGSPCKQGNGRRKRRKVSDNPQATPETVLRRSSRRASARKRVSSTILVEVTDDPLMSLETSALTGEKPLISNSQKYEQCSDPLPKLQFPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKNLEYLSNEGCQSASNCLRNLSWDFLDLVTWPIFMAEYLLIHGSGFKTGFDLKHLMFKTDYYKQPVTAKVEILQYLCNDMIESEAIRSELNRRSLVTETDVGFDQNMYFDTGKKKRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDHLPEGDWYCPECVIGKHMAWMKSRRSLRGADLLGMDLDGRLYFNSCGYLLVSNSSEAGSLFNYYHRNDLHVVIEALKSMDPLYEGILMTIYKHWDISANLSVGDSVFNRANDQRKLDENSTIDSCMHLVQEFPKAGNRLDSTTTIESPCVASDGSADTTQTRTGIDNVQINGLNDSNRCDESLNQPGIPERCHPVGDCSLTSSSLDVGRKINLRSVGSSITPSMDNKDTSEVPRGIDYINYYSFARTASFVAQELMCKSPEKMNKIFAMSEEEVMSDQAKVITKKSTNFCWPSIQNLNAAAHKEKCGWCFTCKGENEDRDCLFNSVVKPVWEVPNNILVGLQPRKIQNGRLRDIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFFPVKRLLLLLESNLCLLALSADWLKHVDSVATMGSATHIVVSSSRTSSRHGIGRKRARNSDIETSSSSNTASGLGMYWWRGGRLSRKLFNCKALPHSLVTKAARQGGCRKIPGILYPENSDFARRSRFVAWRAAVEMSTSAEQLALQVRELYSNIRWHDIENNYSLYVLDKESRKSVRLFKKSIVRRKCTEGGSVKFLIDFGKRRAIPDVVIKHGSLLEQSASERKKYWLEESYVPLHLLKNFEEKRIVRKSTDKKLGKILEIGRVNKKIPQQRGFSYLFTRLERSDCHQCRHCNKDVAMRDAVRCLHCKGYFHKRHARKSGGKRTTGSSYSCHRCQDGLHAKTNTNKRKVDSKLQKIQAKKRKTVPSVCKPVNLKGNKKALSNNKIRQARSRNSKNIPSSIPLRRSTRKAKSLYMQSQLNGGHKKGKKNVGRKKGKQGKTKKVIPQKSKETTGQYKKSEVTTARKKRTKICNSYWLNGLQLSRKPNDERVMLFKEKKRVASSKDFSGSLDHPKCCLCCGNECTLNYIACEICGDWFHGDAFGLNVENARQLIGFKCHVCLDRTAPICPHLKVNALSCTESNAAIECGEELSNPVSLQPLSEV* 1703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0190 1702 Pfam PHD-finger 678 720 IPR019787 -
Gso12g0190 1702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1607 1666 IPR013083 -
Gso12g0190 1702 ProSiteProfiles Zinc finger PHD-type profile. 675 722 IPR019787 -
Gso12g0190 1702 PANTHER PHD FINGER FAMILY PROTEIN 1 1676 - -
Gso12g0190 1702 ProSiteProfiles DDT domain profile. 480 540 IPR018501 -
Gso12g0190 1702 SMART PHD_3 677 720 IPR001965 -
Gso12g0190 1702 SMART PHD_3 1389 1436 IPR001965 -
Gso12g0190 1702 SMART PHD_3 1614 1660 IPR001965 -
Gso12g0190 1702 MobiDBLite consensus disorder prediction 1525 1542 - -
Gso12g0190 1702 CDD PHD1_AIRE 677 719 - -
Gso12g0190 1702 SMART testlast3 480 540 IPR018501 -
Gso12g0190 1702 SUPERFAMILY FYVE/PHD zinc finger 1610 1662 IPR011011 -
Gso12g0190 1702 MobiDBLite consensus disorder prediction 1148 1169 - -
Gso12g0190 1702 Pfam DDT domain 484 536 IPR018501 -
Gso12g0190 1702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 736 IPR013083 -
Gso12g0190 1702 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 594 626 IPR028942 -
Gso12g0190 1702 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1676 - -
Gso12g0190 1702 MobiDBLite consensus disorder prediction 59 106 - -
Gso12g0190 1702 MobiDBLite consensus disorder prediction 378 418 - -
Gso12g0190 1702 SUPERFAMILY FYVE/PHD zinc finger 662 721 IPR011011 -
Gso12g0190 1702 MobiDBLite consensus disorder prediction 1518 1559 - -
Gso12g0190 1702 ProSitePatterns Zinc finger PHD-type signature. 678 719 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0190 Gso-Chr12 1581760 1593890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0190 1 1671 PHD Transcription Factor Family AT5G12400 40.315 0.0 1081
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso12g0190 DDT 6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0190 - - gmx:100791832 3301.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0190 12 1581760 1593890 Gso11g0814 11 7303240 7315272 GST