Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0176 ATGGAGATAGAATCATCAGCAGCCACCGATAGCAACAACTGGGGTGGTGCAGCTGCTGTTGAGAGAGAGATGACATACACTGGCTTTGACAGAGGAACCTTCTTGGCTTGGCAAGATCTGAGAGTGGTGATTCCTAACTTTGGAAAGGGACCAACCAAGAGGTTGCTTAATGGACTCAATGGCTATGCTGAGCCTGGTAGAATCATGGCCATTATGGGTCCTTCTGGCTCTGGAAAATCCACCCTTCTTGATTCACTTGCAGGTAGACTCTCAAAAAATGTGGTTATGACAGGAAATGTTCTTCTCAATGGAAAGAAAAAAGGCCTAGGCGCCGGCTACGGTGTTGTTGCATACGTAACTCAAGAAGATGTGCTGCTGGGAACACTTACTGTGAAGGAGACCATATCCTACTCAGCCCATCTACGTCTTCCAACATCAATGAGCAAAGAAGAAGTGAACAGCATCATCGATGGAACAATCATAGAAATGGGTCTTCAAGACTGTGCTGATAGGTTGATTGGTAATTGGCACTTTAGAGGGATAAGTGGAGGGGAGAAGAAGAGACTTAGCATTGCACTTGAGATCCTTACAAGGCCTCGCTTACTGTTTCTTGATGAACCAACCAGTGGCCTTGATAGTGCCTCTGCATTTTTTGTTGTTCAAACTCTTAGAAATGTTGCTCGTGATGGAAGGACTGTTATCTCTTCCATTCATCAACCAAGCAGTGAAGTCTTTGCACTCTTTGATGACCTCTTCTTACTATCTGGCGGTGAAACTGTTTATTTTGGAGAAGCAAAATCGGCAATTGAGTTTTTTGCTGAAGCTGGTTTCCCTTGTCCACGTAAAAGAAATCCTTCTGATCACTTCCTACGATGTATCAATTCTGATTTCGACATCGTAACAGCTACACTGAAGGGATCTCAAAGAATTCATGATGTTCCAAATTCAGCAGATCCTTTCATGAATTTGGCTACAGCAGAGATTAAGGCAACGCTAGTTGAGAAATATAGGCGTTCAACATATGCCAGAAGGGCAAAGAACAGAATTCAAGAACTGTCTACCGATGAAGGGCTTGAACCTCCAACACAACATGGAAGTCAAGCTAGTTGGTGGAAGCAACTATCAACGTTGACAAAGAGATCATTTGTGAACATGTGTAGAGATGTGGGTTACTACTGGTTGAGGATCATAATTTACATCATTGTATCCATATGTGTGGGAACCGTTTATTTTGATGTTGGCTATAGCTACACTTCCATCCTGGCCCGTGGTGCCTGCGGTGCATTTATATCAGGATTTATGACATTCATGTCAATTGGGGGCTTTCCATCATTTATTGAAGAAATGAAGGTATTTTATCGAGAAAGGCTTAATGGATACTATGGAGTTGCAGCATATATTTTAGCCAACTTCCTTTCTTCTTTCCCATTCTTGGTTGCAATTGCTCTGACAACTAGCACCATCACGTATAACATGGTGAAATTCAGGCCAGGAATCAGTCACTTTGTGTTTTTCTTTCTCAACATCTACAGCTGCATCTCCGTAATAGAGAGCCTCATGATGGTTGTAGCTTCACTTGTTCCAAATTTCCTCATGGGAATAATTACAGGGGCTGGAATAATAGGAATCATGATGATGACCTCCGGATTCTTTAGGTTGCTCTCTGATCTTCCAAAGCCGGTTTGGCGCTACCCAATTTCATATATCAGTTATGGTTCCTGGGCAATTCAGGGTTCCTACAAGAATGACTTGCTTGGGCTTGAGTTTGATCCTCTCTTACCTGGTGACCCAAAATTGACTGGAGAATACGTGATCACACACATGTTAGGCATTGAATTAAACCATTCCAAGTGGTGGGACTTAGCAGCTCTATTTGTGATTCTCATATGTTACAGACTTCTCTTCTTTACTGTTCTCAAGTTCAAGGAGAGAGCATCCCCATTATTTCAGACACTCTATGCCAAGAGAACCATCCAACAGCTTGAAAAAAGACCCTCTTTCAGGAAGATGCCATCTTTCCCTTCACAGAGGCATCAATCCCTCCATTCACTTTCTTCTCAAGATGGTCTTGATTCTCCACTCCACTAA 2088 0.4267 MEIESSAATDSNNWGGAAAVEREMTYTGFDRGTFLAWQDLRVVIPNFGKGPTKRLLNGLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKNVVMTGNVLLNGKKKGLGAGYGVVAYVTQEDVLLGTLTVKETISYSAHLRLPTSMSKEEVNSIIDGTIIEMGLQDCADRLIGNWHFRGISGGEKKRLSIALEILTRPRLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAIEFFAEAGFPCPRKRNPSDHFLRCINSDFDIVTATLKGSQRIHDVPNSADPFMNLATAEIKATLVEKYRRSTYARRAKNRIQELSTDEGLEPPTQHGSQASWWKQLSTLTKRSFVNMCRDVGYYWLRIIIYIIVSICVGTVYFDVGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERLNGYYGVAAYILANFLSSFPFLVAIALTTSTITYNMVKFRPGISHFVFFFLNIYSCISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGSWAIQGSYKNDLLGLEFDPLLPGDPKLTGEYVITHMLGIELNHSKWWDLAALFVILICYRLLFFTVLKFKERASPLFQTLYAKRTIQQLEKRPSFRKMPSFPSQRHQSLHSLSSQDGLDSPLH* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0176 695 Pfam ABC transporter 56 209 IPR003439 GO:0005524
Gso12g0176 695 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 32 690 - -
Gso12g0176 695 SMART AAA_5 65 238 IPR003593 -
Gso12g0176 695 Gene3D - 30 276 IPR027417 -
Gso12g0176 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 273 IPR027417 -
Gso12g0176 695 CDD ABCG_EPDR 35 263 - -
Gso12g0176 695 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 32 690 - -
Gso12g0176 695 MobiDBLite consensus disorder prediction 672 695 - -
Gso12g0176 695 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524
Gso12g0176 695 MobiDBLite consensus disorder prediction 663 695 - -
Gso12g0176 695 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 281 IPR003439 GO:0005524
Gso12g0176 695 Pfam ABC-2 type transporter 238 294 IPR043926 GO:0140359
Gso12g0176 695 Pfam ABC-2 type transporter 373 582 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0176 Gso-Chr12 1451178 1457841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0176 51 250 Calmodulin-binding Proteins AT2G36910 31.579 2.81e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0176 K05681 - gmx:100777598 1325.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0176 12 1451178 1457841 Gso11g0798 11 7165834 7172864 GST