Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0175 ATGGAGATAGAACAAGCCACTACCAATGAAAAGGGTGTTACCGACTATGGTGATGCTGAAATGATTTCAGATAATAATAAGAGAGGGATGTATCTTGTGTGGGAAGATTTAACTGTTGTAGTTCCAAATTTTGGGAATGGGCACACAAGAAGATTGCTTGATGGGTTGAGTGGATTTGCTGAACCTAACAGAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAATCTACTCTTCTTGATGCTCTAGCAGGTAGACTCTCTAGAAACGTTATCATGTCTGGAAATGTGCTTTTAAATGGAAAGAAGAGGAGATTAGACTATGGAGTCGTAGCATATGTGACCCAAGAAGACATAGTGTTGGGAACACTAACAGTGAGAGAGACAATATCTTACTCAGCTAATCTAAGGCTTCCATCTAGCATGACAAAAGAAGAGGTGAATGGCATCATAGAGGGGACAATTATGGAGATGGGTCTTCAAGACTGTGGTGATCGGCTAATAGGGAATTGGCACTTGAGAGGTATAAGCGGTGGAGAAAAGAAAAGGCTAAGCATAGCACTTGAAATCCTCACAAGGCCAAGCCTCTTGTTCCTTGATGAACCCACCAGCGGTCTAGATAGTGCCTCAGCATATTTTGTTGCCCAAACTTTGAGAAACTTAGGTCATGATGGCAAGACTGTTATCTCTTCTATACACCAACCAAGTAGTGAGGTTTTTGCACTCTTTGACGATCTCTTTCTTCTTTCTGGAGGTCAAACAATTTATTTTGGACCGGCCAAAAAGGCAGTTGAGTTCTTTGCCAAAGCGGGATTCCCATGTCCAAGTAGAAGAAACCCTTCAGATCATTTCCTCCGTTGTATTAATTCAGACTTTGACGCTGTCACAACAACTATGATGGCCTGCCAAAGAGTACATGAAGAAATGTCAATAACAACGGGATCGTTATCAACTGCAGCAATCAAAGCAACACTCATAGAGAAATACCGATGGTCAGAGCACGCAACCACTGCAAGAGCAAGAATCAAAGAAATATCAAGCATTGAAGGACATGAATTTGAAAGTAAAAGCAACTGCGAAGCCAAATGGTGGAAGCAACTATCAACGCTGACTCGAAGATCTTTCGTGAACATGTCTAGAGATGTGGGATACTACTGGATAAGGATAACTATCTATGTTGCCTTATCTCTGTCTGTTGGAACAATCTTTTATGAAGTTGGATCGAGTTATAGAGCCATTTTTGCAAGAGGAGCATGTGGCGCTTTTATATCAGGTTTCATGACATTCATGTCCATAGGGGGCTTCCCGTCTTTCATAGAAGAAATGAAGGTTTTCTACAAAGAAAGACTGAACGGATATTATGGCGTTGGAGTCTACATTCTTTCAAATTTTCTGTCTTCATTTCCCTTTGTGGCAGTGATGTCCATTGCTACGGGGACAATAACCTATTATATGGTTAGGTTTCGCACAGAATTTTCACATTATGTGTATATCTGTCTGGATCTTATTGGCTGCATTGCGGTTGTGGAGAGCTCCATGATGATTATAGCTTCACTGGTTCCCAACTTCCTCATGGGATTGATAATTGGAGCGGGATATATTGGTGTTATGATGATGACTGCTGGCTATTTCCGTCAGATCCCTGATCTTCCCAAGATCTTCTGGCGTTACCCAATATCATACATCAACTATGGCGCATGGGGATTGCAGGGAGCTTTCAAGAATGACATGATTGGGATGGAGTTTGATCCCTTAGAACCCGGGGGCACAAAACTGAAAGGAGAAATCATCCTCAAAACCATGCTTGGCATTCGAGTTGAGATTTCAAAGTGGTGGGACTTAGCAGCAGTCATGATCATCCTCGTATTGCTTAGAGTTCTTTTCTTTGTCATTCTGAAATTCAAGGAGAGAGCTGCACCTTTTCTTTATAGTATCTACGCCAGGCAAACTCTGCAACGTATCAAGAAGCGACCTTCGTTCAGGAAAGGACCATCTTTCCCTTCCAAGCCCCACCAATCACTGCATCCCTTGTCTTCGCAAGAGGGGCTCAACTCCCCTATTCATTAG 2067 0.4243 MEIEQATTNEKGVTDYGDAEMISDNNKRGMYLVWEDLTVVVPNFGNGHTRRLLDGLSGFAEPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVLLNGKKRRLDYGVVAYVTQEDIVLGTLTVRETISYSANLRLPSSMTKEEVNGIIEGTIMEMGLQDCGDRLIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSASAYFVAQTLRNLGHDGKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGPAKKAVEFFAKAGFPCPSRRNPSDHFLRCINSDFDAVTTTMMACQRVHEEMSITTGSLSTAAIKATLIEKYRWSEHATTARARIKEISSIEGHEFESKSNCEAKWWKQLSTLTRRSFVNMSRDVGYYWIRITIYVALSLSVGTIFYEVGSSYRAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERLNGYYGVGVYILSNFLSSFPFVAVMSIATGTITYYMVRFRTEFSHYVYICLDLIGCIAVVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRQIPDLPKIFWRYPISYINYGAWGLQGAFKNDMIGMEFDPLEPGGTKLKGEIILKTMLGIRVEISKWWDLAAVMIILVLLRVLFFVILKFKERAAPFLYSIYARQTLQRIKKRPSFRKGPSFPSKPHQSLHPLSSQEGLNSPIH* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0175 688 MobiDBLite consensus disorder prediction 658 688 - -
Gso12g0175 688 Gene3D - 20 271 IPR027417 -
Gso12g0175 688 Pfam ABC-2 type transporter 233 320 IPR043926 GO:0140359
Gso12g0175 688 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 32 276 IPR003439 GO:0005524
Gso12g0175 688 MobiDBLite consensus disorder prediction 671 688 - -
Gso12g0175 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 269 IPR027417 -
Gso12g0175 688 CDD ABCG_EPDR 29 258 - -
Gso12g0175 688 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 27 683 - -
Gso12g0175 688 Pfam ABC-2 type transporter 366 574 IPR013525 GO:0016020|GO:0140359
Gso12g0175 688 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 27 683 - -
Gso12g0175 688 Pfam ABC transporter 55 204 IPR003439 GO:0005524
Gso12g0175 688 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524
Gso12g0175 688 SMART AAA_5 62 252 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0175 Gso-Chr12 1437956 1444945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0175 51 245 Calmodulin-binding Proteins AT2G36910 28.241 2.79e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0175 K05681 - gmx:100788651 1353.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0175 12 1437956 1444945 Gso11g0797 11 7152105 7158941 GST