Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0154 ATGGCTTACATGTGTGCAGACAGTGGCAACCTGATGGCGATTGCGCAACAAGTGATTAAGCAGAAGCAGCAGCAAGAGCAGCAGAAGCAGCAGCAGCAGCAGCAGACCAATCCAATTCCATGGAACAGCACTCCTCCTCTCCCTCCCACCGATTTCCCCGACCCCTTCCAATCCGATCCCCCCTTCCACTTCCAACCCTTCCGCTTCTCCGACTTCGACTCCGACGACTGGATGGACTCCCTCATCGCCACCCCCTCCTCCTACACCACCGATTTCCCCTTCCCCTCCTCCGATCTCAACCGCCTCATCTTCCCGCCCCAATCCCCCGACTCGGACTCCCCACAGCAGCCTCTCCTAAAAGCCCTGTCGGAGTGCGCCTCCCTCTCCGAAACCGAACCGGATCAAGCCGCCGAATCCCTAAGCCGTTTGCGGAAATCCGTCTCCCAGCACGGAAACCCCACCGAGCGAGTGGGCTTTTACTTCTGGCAGGCCCTGAGCCGTAAGATGTGGGGAGACAAAGAAAAGATGGAGCCCAGAAGTTGGGAGGAGTTAACACTCTCTTACAAGGCCCTTAACGACGCCTGCCCTTACTCCAAGTTCGCCCACCTAACCGCCAACCAAGCCATCCTCGAAGCCACCGAAAACGCCTCCAACATCCACATCCTCGACTTCGGCATCGTCCAGGGGATCCAGTGGGCCGCGCTCTTGCAAGCTTTCGCCACTCGTGCCTCCGGAAAGCCCAACAAGATCACCATCTCCGGAATCCCCGCCGTCTCCCTTGGTCCCTCTCCCGGCCCTTCTCTCTCCGCCACCGGCAACCGCCTCTCTGACTTCGCCAGGCTCCTCGACTTGAACTTCGTGTTCACGCCCATTCTCACTCCCATTCACCAGCTCGACCACAACAGCTTCTGCATTGACCCAAACGAGGTCTTGGCCGTTAACTTCATGCTTCAGTTGTATAACCTCTTGGACGAGCCTCCCACCGCGGTTGACACTGCGCTCAGGTTGGCCAAGTCTCTCAACCCTAGAATTGTCACCCTTGGCGAGTATGAAGCAAGTGTCACACGTGTCGGGTTTGTCAACCGGTTCAGGACTGCGTTCAAGTACTTCTCTGCTGTGTTTGAGTCTCTGGAGCCTAATTTGGCCGCGGACTCGCCGGAGAGGTTTCAGGTGGAGAGTCTTCTGCTCGGGCGGCGTATTGCCGCTGTTATTGGGCCGGGGCCGGTGAGGGAGAGTATGGAGGACAAGGAGCAGTGGAGGGTTCTGATGGAGCGTGCTGGTTTTGAATCGGTGAGTCTCAGCCATTATGCAATCAGTCAAGCTAAGATACTTCTCTGGAATTACAGCTACAGTTCTCTGTTTTCGCTTGTTGAGTCTAAACCACCGGGGTTTTTGTCTCTGGCTTGGAAGGATGTTCCTCTCTTGACTGTGTCCTCTTGGCGTTAA 1446 0.5657 MAYMCADSGNLMAIAQQVIKQKQQQEQQKQQQQQQTNPIPWNSTPPLPPTDFPDPFQSDPPFHFQPFRFSDFDSDDWMDSLIATPSSYTTDFPFPSSDLNRLIFPPQSPDSDSPQQPLLKALSECASLSETEPDQAAESLSRLRKSVSQHGNPTERVGFYFWQALSRKMWGDKEKMEPRSWEELTLSYKALNDACPYSKFAHLTANQAILEATENASNIHILDFGIVQGIQWAALLQAFATRASGKPNKITISGIPAVSLGPSPGPSLSATGNRLSDFARLLDLNFVFTPILTPIHQLDHNSFCIDPNEVLAVNFMLQLYNLLDEPPTAVDTALRLAKSLNPRIVTLGEYEASVTRVGFVNRFRTAFKYFSAVFESLEPNLAADSPERFQVESLLLGRRIAAVIGPGPVRESMEDKEQWRVLMERAGFESVSLSHYAISQAKILLWNYSYSSLFSLVESKPPGFLSLAWKDVPLLTVSSWR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0154 481 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 119 480 IPR005202 -
Gso12g0154 481 Coils Coil 12 35 - -
Gso12g0154 481 MobiDBLite consensus disorder prediction 19 65 - -
Gso12g0154 481 MobiDBLite consensus disorder prediction 41 60 - -
Gso12g0154 481 ProSiteProfiles GRAS family profile. 109 481 IPR005202 -
Gso12g0154 481 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 119 480 - -
Gso12g0154 481 MobiDBLite consensus disorder prediction 19 40 - -
Gso12g0154 481 Pfam GRAS domain family 119 481 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0154 Gso-Chr12 1267466 1269533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0154 1 481 GRAS Transcription Factor Family AT5G66770 55.461 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso12g0154 GRAS 2.6e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0154 - - gmx:100800989 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0154 12 1267466 1269533 Gso11g0779 11 7008788 7011249 GST