Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0144 ATGATGGGGAGAACTCCATGCAGTGATGAAAATGGTTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTATATTCAGAAACATGGGCATGGGAGTTGGAGAGCACTTCCAAAACATGCAGGGTTGAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACTAACTATTTGAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGTCTGCTATAGCAGGTCATCTGCCAGGTAGGACTGATAATGAAATTAAGAATTTCTGGAACACTCATTTAAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCGGTGACTCATCGTCCAAGATCAGATCACCTTAATCTTCTATCCAATCTCCAACAATTGCTTGCTGCTACAAACATTGTGAGTAATCTCACAAACACTTGGGACACTAATAATGCTCTAAGGCTACAATCAGATGCCACACAACTAGCCAAACTCCAATTGCTGCAGAACATACTTCATGTCCTTGGGGACACTACTCCTACTTCAAACTTGGACCTACTCAATCCATTTGGACCATCATCATCTTCACTGCCAGATGGTTTTCTAAATGAAGTTTTAGGATTGAATCAGTCTAAGCTTCAAAACCTTTATAATGGCTATTCAGCTCAGAATCAGCCAAATCTCCAAAGCTTTGAACCCCCTCATCAGCAGCAAGTTCTACCAACTGGGAATCAGCATATGGATGGAGGAAGCATTGATAGTAGTTGCATGAAACCTGAAAAGGGTGATGAACAACTTGATGTCCCTTATTCTTCTTCAACACCGTTCAATTCTCTTCCAAATCTAGTTTCAGCTTCACCTGAATGTTCCACTCATGTACTCATGCAAATGGAAAACAAGGTAATGCCAAATGAGTGCTCCGACCCTTCTTCTTCCACTTCAACCAACTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAAGCGATGCTTATTGGAAAGATCTCATAGACAAAGAGACTAATTAA 1059 0.4127 MMGRTPCSDENGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKHAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSNLQQLLAATNIVSNLTNTWDTNNALRLQSDATQLAKLQLLQNILHVLGDTTPTSNLDLLNPFGPSSSSLPDGFLNEVLGLNQSKLQNLYNGYSAQNQPNLQSFEPPHQQQVLPTGNQHMDGGSIDSSCMKPEKGDEQLDVPYSSSTPFNSLPNLVSASPECSTHVLMQMENKVMPNECSDPSSSTSTNFEMWGDFMYEEVSDAYWKDLIDKETN* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0144 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gso12g0144 352 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gso12g0144 352 SMART sant 14 64 IPR001005 -
Gso12g0144 352 SMART sant 67 115 IPR001005 -
Gso12g0144 352 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso12g0144 352 Gene3D - 14 67 - -
Gso12g0144 352 Gene3D - 70 117 - -
Gso12g0144 352 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gso12g0144 352 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gso12g0144 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 350 - -
Gso12g0144 352 CDD SANT 70 113 IPR001005 -
Gso12g0144 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso12g0144 352 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gso12g0144 352 PANTHER MYB TRANSCRIPTION FACTOR 4 350 - -
Gso12g0144 352 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0144 Gso-Chr12 1202089 1203877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0144 2 348 MYB Transcription Factor Family AT5G16770 51.821 1.22e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g0144 Myb_DNA-binding 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0144 K09422 - gmx:547488 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0144 12 1202089 1203877 Gso11g0924 11 8310599 8312399 GST