Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0139 ATGAGGGATATTTGTAGGAACTTCCAGCGAGGCAGCTGTCAATATGGAGAAAGGTGTAGATATTTACATGTTCAGCAACAGCGGAAACCTAATGTTAATGGGTTTGGAGGACAGAGCAGTTCTCATCAACAGCAAAATACAAATCCCTTTGGATTTGGGTCTGGCTCTGGCTCACAACAACAGCAGAAGGGTAATCCTTTTGGTTTTGGCAAGCATAACGGCTCCCAGTTGAATGGGGGGCCTCATTCTGAGAACAAACCCAACCAATACAAGCCTTTTGAAAACAAATGGAATCGACAGTCATCCAAACCCCAGCAGAACGGCGTGAAATCTGAAAACAACCCCAAACAATCAGAACATCATATATGCACAGATCCTGAGAACTGCAAGCGCCAGATTGCAGTAGATTTTGAGCAAGAGAAACCACTTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGGCATCAGCTTACGAGGATGCTAATCGTGGTATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAATATACTAAAATCCAAGTTGGTTGAGTTTGACAAACTACTTTCTGAACCTTACAAAATACCAATAAGTTCTTCTCTTGGCAGTCAAACACCCCAATCTATTGGAGCCAATGCAAATCCGTTTTCAACATCTCAAAGTAATGGTCCATTGTCAGTCTCAAGCTTTAGCCAATTGAGTACTCCATTGAACATGGGTTTTGAAAGGCCATCTGCACCACTAACAAACACTCCAACGAAGCCTGGTTTCTTTGGAAGTGGAGGAAACTCTTTGGCATCCAACACAGCAAACCTAAACAGCAATGGTGTCTTCGGTGTTCAAAGCGGCCCATATTCTACACCATTGGATTTGAAAATGTTTCCAGGTTCAACTCAGGAAACATCGACTGCTTTCAGTAACTCTGGTCCCACTTCAATGTTTCAAACAACACCAGATGTCCAGTTGTTAAGTCAGTCCCAAGTGGAGAAAGTGTCGGTAGATCCGAGTATTTGGTTAAAAGAGAAATGGAATCCGGGAGAGATTCCAGAAGAAGCTCCTCCTGATACATTTGTACGGTAG 1125 0.4276 MRDICRNFQRGSCQYGERCRYLHVQQQRKPNVNGFGGQSSSHQQQNTNPFGFGSGSGSQQQQKGNPFGFGKHNGSQLNGGPHSENKPNQYKPFENKWNRQSSKPQQNGVKSENNPKQSEHHICTDPENCKRQIAVDFEQEKPLWILTCYSHCKGAPCDIVGDISYEELRASAYEDANRGMSLQSIVEKERNILKSKLVEFDKLLSEPYKIPISSSLGSQTPQSIGANANPFSTSQSNGPLSVSSFSQLSTPLNMGFERPSAPLTNTPTKPGFFGSGGNSLASNTANLNSNGVFGVQSGPYSTPLDLKMFPGSTQETSTAFSNSGPTSMFQTTPDVQLLSQSQVEKVSVDPSIWLKEKWNPGEIPEEAPPDTFVR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0139 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 25 IPR000571 GO:0046872
Gso12g0139 374 Gene3D - 1 66 - -
Gso12g0139 374 MobiDBLite consensus disorder prediction 30 121 - -
Gso12g0139 374 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 372 - -
Gso12g0139 374 PANTHER MAKORIN-RELATED 2 372 IPR045072 -
Gso12g0139 374 MobiDBLite consensus disorder prediction 30 113 - -
Gso12g0139 374 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Gso12g0139 374 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Gso12g0139 374 MobiDBLite consensus disorder prediction 219 244 - -
Gso12g0139 374 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0139 Gso-Chr12 1164610 1169675 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso12g0139 zf-CCCH 5.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0139 K14321 - gmx:100814339 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0139 12 1164610 1169675 Gso11g0929 11 8345727 8351763 GST