Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0130 ATGCCAAACACCTCGCAGGTTATTTCATGCAAAGCTGCAATATGCTGGGGGGCTGGAAAGCCTGTAACGGTGGAAGAGATACAAGTAGACCCACCAAAAGCAACAGAAGTTCGAGTTAAGATGCTATGTGCCAGTTTATGCCACACAGACATCTCAAGCATTCAAGGATTCCCATATATCAATTTTCCTCTAGCACTTGGACACGAAGGAGTTGGTGTTGTAGAGAGTGTTGGTGATCAAGTGAGAAATTTGAAAGAAGGGGATGTAGTAATTCCAACATACATAGGCGAGTGCCAAGAATGTGAGAACTGTGTTTCAGGAAAAACCAATTTGTGTCTGACATACCCTATAAGATTGACTGGTCTACTACCAGATAACACTTCAAGGATGTCCATCCGAGGCCAGAGGCTACACCATGTCTTAAGTTGTGCAACATGGTCAGAGTACATGGTTAGTGATGCCAACTATACTCTCAAAGTTGATCCAACCATTGATCCAGCCCATGCCAGTTTCATCTCATGTGGGTTTTCAACTGGTTATGGAGCTGCTTGGAAGGAGGCCAAGGTTGAAAGTGGATCCAGTGTAGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGCGCCAAAATGCTGGGAGCAACTAAGATAATTGGAATTGACAAAAATGAGATGAAGAGAGAAAAAGGAGAGGCTTTTGGAATGACTGACTTTATAAAGGCTGGTGATTCAGCTAAATCTGTTTCAGAATTGGTTAAGGAAATGAGTGGTGGGATGGGTGTGGATTATTCCTTTGAGTGCAGTGGAGTTGCCCCTTTACTTACTGAATCTGTGGAAGCCACAAAAGTGGGAACAGGTAAAACAATAGCAATTGGTACAGGAACAGAACCTATTATCCCGTTTGGTCTTACTTCCATTATGTATGGTAGAACTTTGAAAGGTTCTGTTTTTGGGGGGCTAAAAGCCATATCTGACCTGTCCATCGTAGCTAACAAATGCCAGAAAGAGGAATTCCCTCTTCAAGAACTATTCACCCATGAGGTCCCATTGACAGATATAAACAAAGCATTTGAACTATTGAAAAAGCCCAATTGTGTGAAAGTTGTCATCAAGATGTCACATTGA 1131 0.4253 MPNTSQVISCKAAICWGAGKPVTVEEIQVDPPKATEVRVKMLCASLCHTDISSIQGFPYINFPLALGHEGVGVVESVGDQVRNLKEGDVVIPTYIGECQECENCVSGKTNLCLTYPIRLTGLLPDNTSRMSIRGQRLHHVLSCATWSEYMVSDANYTLKVDPTIDPAHASFISCGFSTGYGAAWKEAKVESGSSVAVFGLGAVGLGAISGAKMLGATKIIGIDKNEMKREKGEAFGMTDFIKAGDSAKSVSELVKEMSGGMGVDYSFECSGVAPLLTESVEATKVGTGKTIAIGTGTEPIIPFGLTSIMYGRTLKGSVFGGLKAISDLSIVANKCQKEEFPLQELFTHEVPLTDINKAFELLKKPNCVKVVIKMSH* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0130 376 SUPERFAMILY GroES-like 326 372 IPR011032 -
Gso12g0130 376 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Gso12g0130 376 Pfam Alcohol dehydrogenase GroES-like domain 35 159 IPR013154 -
Gso12g0130 376 SUPERFAMILY GroES-like 4 190 IPR011032 -
Gso12g0130 376 Gene3D - 14 369 - -
Gso12g0130 376 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 373 - -
Gso12g0130 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Gso12g0130 376 CDD liver_alcohol_DH_like 8 373 - -
Gso12g0130 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 332 IPR036291 -
Gso12g0130 376 Gene3D - 179 317 - -
Gso12g0130 376 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
Gso12g0130 376 PANTHER ALCOHOL DEHYDROGENASE 5 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0130 Gso-Chr12 1101711 1103874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0130 35 366 Monolignol Biosynthesis Gene Families AT2G21730 27.300 4.53e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0130 K00121 - gmx:100798341 719.539