Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0104 ATGTCTCCACAAACGCCAACTATCCCACTTTTCGTTGTCCTCGCTTCATTAGTCTTATGTAATGGCTATTACTTAGAGGAATCATTTTATAAAACAAATGCTAAACACTACCCTGTGCATGATGGGAGATTGATCAAGACAAAACACGAACATTTTGGTCTAATAACAAGGGCTAATAGAGCTACCCATCTTACTTCTAGGCCTCGTGGAACAGTTAGTGTTGATGACTTTGGAGCCAAAGCAGATGGAAGTGATGACAGCGAGGCATTTGGGAAGGCATGGAATGAAGCATGTTCTAGAGGGGCTATCCTTGTGGTACCTGAAAATAGGATCTATCGTCTTAAGCCAATAATATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGCTCTATGGAACAATCGAGGCATGGTCTCAAATGTCGGCATACCAAGAAGATAGACAACATTGGATTGTGTTTGATAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCACATTCAATGGCAAAGGGAAAAGGTGGTGGCAAAGCTCCTGCAAAGTCAACACTAACCTTCCATGCAACGACGGACCAAGACCAAAAGCCGTGACTTTCTATCAATGCAACAATTTGAAAGTGACAAACCTGAGGTTTAAAGATGCACCGCAAATGCATGTGGTCTTTGAAGGATGCTTCAATGTTATTGTTTCGAATCTCGTCATCAGAGCACCAGGTGACAGCCCCAACACTGATGGAATTCATGTCGCAGACACACAAAATATTGTCATAAGTAACAGTGACATTGGGACAGGTGATGATTGTATTTCAATAATAAGCGGGTCCCAAAACGTAAGAGCCACAGATATTACCTGCGGACCTGGACATGGAATAAGCATTGGAAGCTTGGGAGCAGATAACTCGGAAGCTGAAGTCTCTAATGTGGTAGTGAACAGAGCAACCTTAACAGGAACGACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGTTCTGGTTATGCAAGGAACATTAAATTTTTGAACATAGCGATGCAAAATGTGACAAATCCCATAATCATAGATCAATACTACTGTGATCAATCGAAGCCATGCCAAGAGCAGGACTCAGCTGTGCAATTAAGCAATGTGTTGTACCAAAACATAAAAGGAACAAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCCGAGCCGTCCCTTGCAGACAAATTTACGTTCAGGATGTGATTTTAGAACCCCAAGGCCATGGTGGCACCATTGCTACATGTGAACATGTTAGTTATGTCAACAGAGGAAAGTTTTTTCCTCAATGCACTCCATGA 1323 0.4255 MSPQTPTIPLFVVLASLVLCNGYYLEESFYKTNAKHYPVHDGRLIKTKHEHFGLITRANRATHLTSRPRGTVSVDDFGAKADGSDDSEAFGKAWNEACSRGAILVVPENRIYRLKPIIFSGPCRPNTAFMLYGTIEAWSQMSAYQEDRQHWIVFDSVSNFRVGGGGTFNGKGKRWWQSSCKVNTNLPCNDGPRPKAVTFYQCNNLKVTNLRFKDAPQMHVVFEGCFNVIVSNLVIRAPGDSPNTDGIHVADTQNIVISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFLNIAMQNVTNPIIIDQYYCDQSKPCQEQDSAVQLSNVLYQNIKGTSASEVAIKFDCSRAVPCRQIYVQDVILEPQGHGGTIATCEHVSYVNRGKFFPQCTP* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0104 440 SMART pbh1 334 355 IPR006626 -
Gso12g0104 440 SMART pbh1 225 251 IPR006626 -
Gso12g0104 440 SMART pbh1 252 273 IPR006626 -
Gso12g0104 440 SMART pbh1 305 326 IPR006626 -
Gso12g0104 440 SUPERFAMILY Pectin lyase-like 64 439 IPR011050 -
Gso12g0104 440 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Gso12g0104 440 Pfam Glycosyl hydrolases family 28 104 427 IPR000743 GO:0004650|GO:0005975
Gso12g0104 440 Gene3D - 56 435 IPR012334 -
Gso12g0104 440 PANTHER - 6 439 - -
Gso12g0104 440 PANTHER POLYGALACTURONASE 6 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0104 Gso-Chr12 894077 897258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0104 29 439 Glycoside Hydrolase AT3G07970 56.386 2.28e-156 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0104 K01184 - gmx:732596 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0104 12 894077 897258 Gso15g2264 15 51586521 51591464 PCT