Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0087 ATGGGCAAAGCAAGTAGTACTTGTGTTCTTCTATCCCTTCTCATTCTTTCACTCTTTGTGGCTGAAATCTATGGAAATAGACAAGTTCAAGCTCTTAACAAACTGCACAAGTCCACCAAGTTCAGAGGAAATTCACAAATTGATAGGAGTGAGTTTGAGGTAGAGGAGCTTGTTTATGATGACATTGTTCACTCTCAAGAGGGTCTCAAAGAGAAAGATAGAATTGAGAGTCTTCCAGGACAACCCCCTGTGAGTTTTTCTCAGTATGGAGGGTATGTCACTGTGGATAAAGTGGCTGGTCGTGCCTTCTATTATTACTTTGTTGAAGCTCAACGTTCTAAACAAACACTTCCACTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCTCTTGGCTATGGAGCAATGCAAGAACTTGGACCTTTTCGAGTAAACAGTGATGGCAAAACACTACACAGAAATATATTTTCTTGGAACAAAGTTGCAAATGTTTTATTCTTGGAGTCACCTGCTGGAGTAGGATTTTCCTATTCAAACAAATCAAAAGATTATGATAACAATGGAGATAAGAAAACAGCCGCAGACAATTATTTATTCTTGGTGAATTGGTTGGAGAGATATCCAGAATATAAGGACAGAGATTTCTATATTGCTGGGGAAAGCTATGCTGGGCATTATGTGCCTCAACTTGCACATAACATTCTCTATCATAACAAAAAGGCAAATAAGAAAATCATCAACCTCAAAGGAATCTTGATTGGGAATGCAGTGATCAACGAGGAAACTGACTCGGACGGACTGTATGATTATCTTGCTAGCCATGCAATCATCTCAGACAAAGCAGCTTATCTCAACAAAGCTTGTCATTCATCATCATCAAAGATTCAGGAAAGTGTGTGCGATGCAGCCGGAGATGAAGTTGGGGACGATATTGAATACATTGATTTATACAATATTTATGCTCCACTATGCAAGAATGCAAATCTCACATCCCTGCCAAAAAGGAACTCAATTGTGACTGATCCATGTAGTGAGTATTATGTGTATGCATATCTTAATAGAAAAGATGTTCAAGAGGCTCTCCATGCCAATGTAACCAACCTCAAACATGACTGGGAACCCTGTAGCGATGTCATAACAAAGTGGGTTGATCAAGCTTCAACAGTTCTTCCACTTTTACATGAATTCCTCAACAATAGCCTCAGGGTTTGGATTTTCAGTGGTGACACGGATGGAAGGGTGCCTATTACATCAACCAAGTATTCAGTTAAGAAGATGAACCTTCCCATTAAAACTGCTTGGCACCCTTGGTTTTCCTATGGAGAGGTTGGTGGCTATGTAGAAATATACAAGGGAGGCCTAAGATTAGCTACGGTGAGGGAAGCAGGGCATCAAGTGCCAAGTTACCAACCAGCCAGAGCCCTAACTTTGATAAAATATTTCTTAGACGGCACTCCTCTTCCTGGTCCTCCCAAAAGAAAGGACTAG 1491 0.4058 MGKASSTCVLLSLLILSLFVAEIYGNRQVQALNKLHKSTKFRGNSQIDRSEFEVEELVYDDIVHSQEGLKEKDRIESLPGQPPVSFSQYGGYVTVDKVAGRAFYYYFVEAQRSKQTLPLLLWLNGGPGCSSLGYGAMQELGPFRVNSDGKTLHRNIFSWNKVANVLFLESPAGVGFSYSNKSKDYDNNGDKKTAADNYLFLVNWLERYPEYKDRDFYIAGESYAGHYVPQLAHNILYHNKKANKKIINLKGILIGNAVINEETDSDGLYDYLASHAIISDKAAYLNKACHSSSSKIQESVCDAAGDEVGDDIEYIDLYNIYAPLCKNANLTSLPKRNSIVTDPCSEYYVYAYLNRKDVQEALHANVTNLKHDWEPCSDVITKWVDQASTVLPLLHEFLNNSLRVWIFSGDTDGRVPITSTKYSVKKMNLPIKTAWHPWFSYGEVGGYVEIYKGGLRLATVREAGHQVPSYQPARALTLIKYFLDGTPLPGPPKRKD* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0087 496 Gene3D - 344 381 - -
Gso12g0087 496 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Gso12g0087 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Gso12g0087 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Gso12g0087 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Gso12g0087 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Gso12g0087 496 PANTHER CARBOXYPEPTIDASE 9 488 - -
Gso12g0087 496 Gene3D alpha/beta hydrolase 69 327 IPR029058 -
Gso12g0087 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 488 IPR001563 GO:0004185|GO:0006508
Gso12g0087 496 SUPERFAMILY alpha/beta-Hydrolases 71 489 IPR029058 -
Gso12g0087 496 Pfam Serine carboxypeptidase 79 484 IPR001563 GO:0004185|GO:0006508
Gso12g0087 496 Gene3D - 390 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0087 Gso-Chr12 716126 720938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0087 352 488 Calmodulin-binding Proteins AT2G22960 28.467 2.89e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0087 K16297 - gmx:100783864 978.008