Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0072 ATGGAGGAAGTTCAAGAGTCTCAAACCCAATCATCGCTCGGTCAAGAAGAGGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAGGGGGAACCGGCACCAGAATTCAGTAGTAACCCCCCAAAAGTTGATTCTGAAGTTGAGGTCCTTCATGAGAAGGTCAGCAAACAAATCATTAAGGAAGGTCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCTGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGAAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGTGCGTTGGTGAGTGTGGGCTGGGAATTAGGATATGGAGAGGAAGGAAGCTTCTCTTTTCCAAATGTTCCACCCAAGGCAGATTTAGTTTATGAAGTTGAGCTCATTGGCTTTGATGAAACAAAAGAAGGGAAAGCTCGCAGTGATATGACTGTGGAGGAAAGAATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGAGATATGGCTCTGGCAGTAAAGAATCCATGCCATCTTAACATGGCAGCCTGTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACGGATGCTGCCAGGGAAGATTTTCTAAAGGCAAGTAAATATGCCCCTCAAGACAAAGCAATTGCTAAAGAATTGAGATTGCTTGCTGAACATGACAAGGCTGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTCAACCAGTTCCTAAGCCAAGAAATTGGCTCATACTTATTTGGCAGTGGTTGCTTTCAGTATTCTATGGCCTTGTCACGCTCTTCAAGCGTCAAAGGCATAAATCTGACTAA 1113 0.4376 MEEVQESQTQSSLGQEEENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVSKQIIKEGHGQKPSKYSTCFFHYRAWAEKSQHKFEDTWLEQRPIEMVLGKEKKEMTGLGIGVASMKAGERALVSVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDAAREDFLKASKYAPQDKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKPRNWLILIWQWLLSVFYGLVTLFKRQRHKSD* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0072 370 SUPERFAMILY FKBP-like 45 169 - -
Gso12g0072 370 Gene3D Tetratricopeptide repeat domain 165 296 IPR011990 GO:0005515
Gso12g0072 370 SUPERFAMILY TPR-like 175 326 IPR011990 GO:0005515
Gso12g0072 370 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 67 160 IPR001179 GO:0003755
Gso12g0072 370 ProSiteProfiles TPR repeat profile. 268 301 IPR019734 GO:0005515
Gso12g0072 370 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 34 331 - -
Gso12g0072 370 MobiDBLite consensus disorder prediction 1 46 - -
Gso12g0072 370 Pfam Tetratricopeptide repeat 269 301 IPR019734 GO:0005515
Gso12g0072 370 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 71 163 IPR001179 GO:0003755
Gso12g0072 370 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP42-RELATED 34 331 - -
Gso12g0072 370 Gene3D - 39 164 IPR046357 GO:0003755
Gso12g0072 370 SMART tpr_5 234 267 IPR019734 GO:0005515
Gso12g0072 370 SMART tpr_5 183 216 IPR019734 GO:0005515
Gso12g0072 370 SMART tpr_5 268 301 IPR019734 GO:0005515
Gso12g0072 370 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0072 Gso-Chr12 610536 613913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0072 106 330 Calmodulin-binding Proteins AT3G25230 34.956 1.54e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0072 - - gmx:100790587 741.88