Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0063 ATGACCAACCATGCATGTTATTCCTGCCTCCTTGCAAGGTTGGTGCTTTTCTTGGCTCTTTTTCAAGGCACTTCTGCCCAAACACAAGCTCAGGCTCTTCTCAGGTGGAAACAGAGTCTCCCTGCCCAATCCATTTTGGACTCATGGGTCATCAACTCCACTGCTACAACTCTAACTCCATGCTCATGGCGAGGTATCACTTGTGATTCTCAAGGCACTGTCACTATAATAAACTTGGCTTACACTGGGCTTGCAGGTACCCTTCTAAACTTGAACTTGTCTGTTTTCCCTAACCTTCTCCGTCTTGATCTCAAAGAAAACAATCTCACTGGCCACATACCACAAAACATTGGGGTGCTCTCAAAGCTCCAATTCCTTGATCTTTCCACCAACTTTCTCAATGGCACTCTGCCTCTTTCCATTGCCAATCTGACTCAAGTTTTTGAGCTTGATCTTTCAAGAAATGATATAACAGGGATATTAGATCCTCGGTTATTTCCTGATGAATCTGATAGGCCCCAAAGTGGCCTCATTGGTATCAGAAATCTCCTCTTCCAGGACACCCTGCTAGGTGGTAGAATTCCAAATGAAATAGGGAACATAAGAAACTTGACTCTGCTAGCTCTAGATGCAAACAACTTCTTTGGGCCTATTCCTTCATCTTTAGGTAACTGCACACATTTAAGCATTCTTAGAATGTCTCAAAACCAACTCTCTGGCCCAATACCCCCAAGTATTGGTAACTTAACCAATCTAACCGATGTGCGCTTTCAAATTAACAACTTAAATGGTACGGTGCCACGAGAATTGGGAAACTTGTCATCATTGATTGTGTTGCATCTTGCTGAGAACAACTTTGTTGGTGAATTACCACCACAAGTGTGCAAAAGTGGCAGACTTGTAAATTTTAGTGCAGCATACAATAGTTTCACAGGCCCAATACCAAGAAGCCTTAGAAACTGCCCAGCATTGTACAGAGTTCGACTTGAATACAACCGGCTGACAGGTTATGCAGATCAGGATTTTGGAGTTTATCCTAATCTCACTTACATGGACTTCAGCTATAATAGGGTGGAAGGTGACCTCTCTGCAAATTGGGGTGCTTGCAAAAACTTGCAATATCTCAACATGGCTGGGAATGGAGTAAGTGGCAACATTCCAGGTGAGATTTTTCAGTTGGACCAACTGCGGGAGCTTGACCTATCCTCCAACCAAATATCAGGAGAGATTCCTCCTCAGATAGTAAATTCCTCTAACTTGTATGAATTAAGTTTGAGTGACAACAAACTCTCTGGTATGGTACCAGCGGATATTGGAAAGCTTTCCAATTTGCGGTCCTTAGACATCTCCATGAACATGCTGTTGGGACCAATCCCCGATCAGATAGGGGACATCTACAACTTGCAGAATTTAAATATGAGCAACAATAACTTCAATGGCACAATCCCCTACCAAGTTGGAAACCTTGCATCTTTACAAGATTTTTTGGACTTAAGTTACAATTCACTTTCAGGACAAATTCCTTCTGATCTTGGGAAGCTTTCAAATTTGATAAGCTTGAATATCTCTCACAACAACCTGTCAGGTTCTATCCCTGACTCCCTTAGTGAAATGGTGAGTTTGTCAGCCATCAACCTCTCCTACAATAATTTGGAGGGTCCAGTTCCTGAAGGTGGCGTATTCAATTCTTCTCATCCCCTGGATTTGAGCAACAACAAAGATTTATGCGGGAATATTCAAGGTTTGCGTCCATGTAATGTTTCTCTCACTAAACCTAATGGTGGATCAAGTAACAAAAAGAAGGTTCTGATCCCAATTGCTGCTTCCTTGGGAGGTGCTCTTTTTATTTCTATGTTGTGTGTTGGGATTGTTTTCTTTTGCTACAAGAGAAAGTCAAGAACTCGAAGACAGAAAAGTTCAATTAAAAGACCAAATCCATTTTCAATTTGGTACTTTAATGGGAGAGTTGTGTATGGAGACATAATCGAAGCTACCAAGAACTTTGACAACCAGTATTGCATTGGGGAAGGAGCGTTGGGAAAAGTTTATAAAGCAGAGATGAAAGGAGGTCAAATATTTGCTGTTAAAAAGTTGAAGTGTGATGAAGAAAATTTAGACGTTGAAAGTATAAAAACCTTTAAGAATGAGGTAGAAGCCATGTCTGAAACACGACACCGAAACATTGTTAAGCTTTACGGATTTTGCTCTGAAGGGATGCACACATTTTTAATTTACGAGTACATGGATAGAGGGAACTTAACTGACATGCTGAGAGATGACAAGGATGCATTAGAACTAGATTGGCCTAAGAGGGTTGACATTGTCAAAGGTGTAGCCAATGCTTTGTCCTATATGCATCATGATTGTGCTCCGCCTTTAATTCATAGAGACATATCAAGCAAGAACGTTTTACTGTCCTCCAATCTTGAAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCTGATTCGCCTATTTGGACATCATTTGCCGGCACATATGGCTATGCTGCTCCAGAACTTGCTTATACAATGGCAGTGACCGAGAAATGTGATGTGTTCAGCTATGGTGTTTTTGCTTTCGAGGTTCTTACGGGAAAGCACCCTGGTGAACTTGTTTCCTACATACAAACTTCTACTGAACAGAAAATAAACTTCAAAGAGATTTTAGACCCTCGCCTCCCGCCTCCTGTCAAGAGCCCTATTTTGAAGGAATTGGCATTGATTGCCAACCTAGCACTTTCGTGTCTGCAAACTAACCCTCAATCTCGACCAACTATGAGAAACATAGCTCAGCTCCTTGCAATGGATACTGCAGATATGAGATGA 2835 0.4162 MTNHACYSCLLARLVLFLALFQGTSAQTQAQALLRWKQSLPAQSILDSWVINSTATTLTPCSWRGITCDSQGTVTIINLAYTGLAGTLLNLNLSVFPNLLRLDLKENNLTGHIPQNIGVLSKLQFLDLSTNFLNGTLPLSIANLTQVFELDLSRNDITGILDPRLFPDESDRPQSGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLLALDANNFFGPIPSSLGNCTHLSILRMSQNQLSGPIPPSIGNLTNLTDVRFQINNLNGTVPRELGNLSSLIVLHLAENNFVGELPPQVCKSGRLVNFSAAYNSFTGPIPRSLRNCPALYRVRLEYNRLTGYADQDFGVYPNLTYMDFSYNRVEGDLSANWGACKNLQYLNMAGNGVSGNIPGEIFQLDQLRELDLSSNQISGEIPPQIVNSSNLYELSLSDNKLSGMVPADIGKLSNLRSLDISMNMLLGPIPDQIGDIYNLQNLNMSNNNFNGTIPYQVGNLASLQDFLDLSYNSLSGQIPSDLGKLSNLISLNISHNNLSGSIPDSLSEMVSLSAINLSYNNLEGPVPEGGVFNSSHPLDLSNNKDLCGNIQGLRPCNVSLTKPNGGSSNKKKVLIPIAASLGGALFISMLCVGIVFFCYKRKSRTRRQKSSIKRPNPFSIWYFNGRVVYGDIIEATKNFDNQYCIGEGALGKVYKAEMKGGQIFAVKKLKCDEENLDVESIKTFKNEVEAMSETRHRNIVKLYGFCSEGMHTFLIYEYMDRGNLTDMLRDDKDALELDWPKRVDIVKGVANALSYMHHDCAPPLIHRDISSKNVLLSSNLEAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSYGVFAFEVLTGKHPGELVSYIQTSTEQKINFKEILDPRLPPPVKSPILKELALIANLALSCLQTNPQSRPTMRNIAQLLAMDTADMR* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0063 944 Gene3D Ribonuclease Inhibitor 263 587 IPR032675 -
Gso12g0063 944 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 4 940 - -
Gso12g0063 944 SUPERFAMILY Protein kinase-like (PK-like) 641 936 IPR011009 -
Gso12g0063 944 Pfam Protein kinase domain 673 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0063 944 ProSiteProfiles Leucine-rich repeat profile. 395 417 IPR001611 GO:0005515
Gso12g0063 944 Gene3D Ribonuclease Inhibitor 169 262 IPR032675 -
Gso12g0063 944 SUPERFAMILY L domain-like 54 383 - -
Gso12g0063 944 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 940 - -
Gso12g0063 944 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515
Gso12g0063 944 Pfam Leucine rich repeat 496 551 IPR001611 GO:0005515
Gso12g0063 944 ProSitePatterns Tyrosine protein kinases specific active-site signature. 793 805 IPR008266 GO:0004672|GO:0006468
Gso12g0063 944 SMART LRR_typ_2 514 538 IPR003591 -
Gso12g0063 944 SMART LRR_typ_2 441 465 IPR003591 -
Gso12g0063 944 SMART LRR_typ_2 393 417 IPR003591 -
Gso12g0063 944 SMART LRR_typ_2 96 120 IPR003591 -
Gso12g0063 944 SMART LRR_typ_2 273 297 IPR003591 -
Gso12g0063 944 SMART LRR_typ_2 144 168 IPR003591 -
Gso12g0063 944 ProSiteProfiles Protein kinase domain profile. 668 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0063 944 Gene3D Phosphorylase Kinase; domain 1 628 747 - -
Gso12g0063 944 Gene3D Transferase(Phosphotransferase) domain 1 748 943 - -
Gso12g0063 944 SUPERFAMILY L domain-like 343 577 - -
Gso12g0063 944 SMART serkin_6 668 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0063 944 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Gso12g0063 944 Gene3D Ribonuclease Inhibitor 26 168 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0063 Gso-Chr12 538216 541623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0063 21 841 Receptor kinase-like Gene Family AT4G08850 39.588 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso12g0063 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0063 - - gmx:100814345 1835.46