Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0061 ATGAACAATCATACATGTTATGCCTGCTTTGCTATTCCAGCTACGTTGCTGCTCGTTTTGATGGTTCTTTTTCAAGGAACTGTTGCCCAAACACAAGCTCAGACACTTCTCAGGTGGAAACAAAGTCTCCCTCACCAATCCATTTTGGACTCATGGATCATCAACTCCACTGCAACAACTCTAAGTCCATGTTCATGGCGAGGTATTACCTGTGATTCTAAAGGCACAGTGACAATTATAAACTTGGCTTACACTGGACTTGCAGGTACCCTTCTAAACTTGAACCTGTCTGTTTTCCCTAACCTTCTCCGTCTTGATCTCAAAGAAAACAATCTCACTGGCCACATACCACAAAACATTGGGGTGCTCTCAAAGCTCCAATTCCTTGATCTTTCCACCAACTTTCTCAATGGCACTCTGCCTCTTTCCATTGCCAATCTGACTCAAGTTTTTGAGCTTGATCTTTCAAGAAATAATATAACAGGGACATTAGATCCTCGGTTATTTCCTGATGGATCTGATAGGCCCCAAAGTGGCCTCATTGGTATCAGAAATCTCCTCTTCCAGGACACCCTGCTAGGTGGTAGAATTCCAAATGAAATAGGGAACATAAGAAACTTGACTCTGCTAGCTCTAGATGGAAACAACTTCTTTGGGCCTATTCCTTCATCTCTAGGCAACTGCACACATTTAAGCATTCTTAGAATGTCTGAAAACCAACTCTCAGGCCCAATACCCCCAAGTATTGCTAAATTAACCAATCTAACCGATGTGCGGCTTTTCAAAAACTACTTAAATGGTACGGTGCCACAAGAATTTGGAAACTTTTCTTCCTTGATTGTGCTGCATCTTGCAGAGAACAACTTTGTTGGTGAATTGCCACCACAAGTGTGCAAAAGTGGCAAACTTGTAAATTTTAGTGCAGCCTACAATAGTTTCACTGGCCCAATTCCAATAAGCCTTAGAAACTGCCCAGCCTTGTACAGAGTTCGACTTGAATACAACCAGTTGACAGGTTATGCAGATCAAGATTTTGGAGTGTATCCAAACCTCACTTACATGGACTTGAGCTATAACAGGGTGGAAGGTGACCTCTCTACAAATTGGGGTGCCTGCAAAAACTTGCAAGTTCTCAACATGGCAGGGAATGAAATAAGTGGTTACATTCCAGGTGAGATTTTTCAGTTGGACCAACTGCATAAGCTTGACCTATCGTCCAACCAAATATCAGGAGACATTCCTTCACAGATAGGAAATTCCTTCAACTTGTATGAATTAAATTTAAGCGACAACAAACTCTCTGGAATTATACCAGCAGAAATTGGAAACCTTTCCAATTTGCACTCCTTAGACTTGTCCACGAACAAGCTGTTAGGACCAATTCCAAATCAGATAGGGGACATCTCGGACTTGCAGAATTTAAATCTGAGCAACAATGACTTGAATGGCACAATTCCCTACCAAATTGGAAACCTTCGTGATTTACAATACTTTTTGGACTTGAGTTACAATTCACTTTCAGGAGAAATACCTACTGATCTTGGAAAGCTTTCAAATTTGATAAGCTTGAATATGTCTCACAACAATCTGTCAGGTTCTATCCCTCACTCCCTTAGTGAAATGTTTAGTTTGTCAACTATCAACCTCTCCTACAATAATTTGGAGGGTATGGTTCCTAAAAGTGGCATATTCAACTCTTCTTATCCCTTGGATTTGAGCAACAACAAAGATCTATGTGGGCAAATTCGGGGCTTGAAACCTTGTAATCTCACTAATCCTAATGGTGGATCCAGTGAACGAAACAAGGTTGTGATCCCTATTGTTGCTTCCTTGGGAGGTGCTCTTTTTATTTCTTTGGGGTTACTTGGGATTGTTTTCTTTTGCTTCAAGAGAAAATCAAGAGCTCCAAGGCAAATAAGTTCATTCAAAAGTCCGAATCCATTTTCAATTTGGTACTTCAATGGGAAAGTTGTGTATAGAGACATAATTGAAGCTACCAAGAACTTTGACAACAAGTATTGCATTGGGGAAGGAGCACTGGGAATAGTTTATAAAGCGGAGATGTCAGGAGGTCAAGTATTTGCTGTAAAAAAGTTGAAGTGTGATTCAAACAACTTAAACATTGAGAGTATAAAATCCTTTGAGAATGAGATAGAAGCCATGACAAAAACACGCCATCGAAACATTATCAAGCTTTACGGATTTTGCTGTGAAGGGATGCACACATTTTTAATTTATGAGTATATGAATAGAGGGAATTTAGCTGACATGCTGAGAGACGACAAGGATGCATTAGAGCTGGATTGGCACAAGAGAATTGATATTATCAAAGGTGTAACGAGCGCTTTGTCCTATATGCATCATGATTGTGCTCCACCTTTAATTCACAGAGACGTATCAAGCAAGAACATTTTGCTGTCCTCCAATCTTCAAGCCCATGTCTCGGATTTTGGAACTGCAAGATTTCTAAAGCCTGATTCGGCTATTTGGACATCATTTGCCGGCACATATGGCTATGCTGCTCCAGAACTTGCTTACACAATGGAAGTGACTGAGAAATGTGACGTGTTCAGCTTTGGCGTTTTGGCCTTAGAGGTTCTTACGGGAAAGCACCCTGGTGACCTTGTTTCATCCATTCAAACTTGTACTGAACAAAAAGTAAACTTGAAGGAGATTTTAGACCCTCGCCTCTCGCCTCCTGCCAAGAACCATATTTTGAAGGAAGTGGATTTGATTGCCAACGTAGCTCTTTCATGTTTAAAGACAAACCCTCAATCTCGACCAACTATGCGAAGCATAGCTCAACTGCTTGAAATGGAGATTGCAGACATCATATAA 2838 0.407 MNNHTCYACFAIPATLLLVLMVLFQGTVAQTQAQTLLRWKQSLPHQSILDSWIINSTATTLSPCSWRGITCDSKGTVTIINLAYTGLAGTLLNLNLSVFPNLLRLDLKENNLTGHIPQNIGVLSKLQFLDLSTNFLNGTLPLSIANLTQVFELDLSRNNITGTLDPRLFPDGSDRPQSGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLLALDGNNFFGPIPSSLGNCTHLSILRMSENQLSGPIPPSIAKLTNLTDVRLFKNYLNGTVPQEFGNFSSLIVLHLAENNFVGELPPQVCKSGKLVNFSAAYNSFTGPIPISLRNCPALYRVRLEYNQLTGYADQDFGVYPNLTYMDLSYNRVEGDLSTNWGACKNLQVLNMAGNEISGYIPGEIFQLDQLHKLDLSSNQISGDIPSQIGNSFNLYELNLSDNKLSGIIPAEIGNLSNLHSLDLSTNKLLGPIPNQIGDISDLQNLNLSNNDLNGTIPYQIGNLRDLQYFLDLSYNSLSGEIPTDLGKLSNLISLNMSHNNLSGSIPHSLSEMFSLSTINLSYNNLEGMVPKSGIFNSSYPLDLSNNKDLCGQIRGLKPCNLTNPNGGSSERNKVVIPIVASLGGALFISLGLLGIVFFCFKRKSRAPRQISSFKSPNPFSIWYFNGKVVYRDIIEATKNFDNKYCIGEGALGIVYKAEMSGGQVFAVKKLKCDSNNLNIESIKSFENEIEAMTKTRHRNIIKLYGFCCEGMHTFLIYEYMNRGNLADMLRDDKDALELDWHKRIDIIKGVTSALSYMHHDCAPPLIHRDVSSKNILLSSNLQAHVSDFGTARFLKPDSAIWTSFAGTYGYAAPELAYTMEVTEKCDVFSFGVLALEVLTGKHPGDLVSSIQTCTEQKVNLKEILDPRLSPPAKNHILKEVDLIANVALSCLKTNPQSRPTMRSIAQLLEMEIADII* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0061 945 Gene3D Ribonuclease Inhibitor 110 170 IPR032675 -
Gso12g0061 945 SMART LRR_typ_2 396 420 IPR003591 -
Gso12g0061 945 SMART LRR_typ_2 99 123 IPR003591 -
Gso12g0061 945 SMART LRR_typ_2 517 541 IPR003591 -
Gso12g0061 945 SMART LRR_typ_2 444 468 IPR003591 -
Gso12g0061 945 SMART LRR_typ_2 147 171 IPR003591 -
Gso12g0061 945 SMART LRR_typ_2 276 300 IPR003591 -
Gso12g0061 945 SUPERFAMILY L domain-like 56 389 - -
Gso12g0061 945 Gene3D Ribonuclease Inhibitor 173 259 IPR032675 -
Gso12g0061 945 Gene3D Transferase(Phosphotransferase) domain 1 749 943 - -
Gso12g0061 945 SMART serkin_6 669 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0061 945 Pfam Protein kinase domain 672 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0061 945 PRINTS Leucine-rich repeat signature 423 436 - -
Gso12g0061 945 PRINTS Leucine-rich repeat signature 444 457 - -
Gso12g0061 945 Pfam Leucine rich repeat 422 481 IPR001611 GO:0005515
Gso12g0061 945 Gene3D Phosphorylase Kinase; domain 1 631 748 - -
Gso12g0061 945 Gene3D Ribonuclease Inhibitor 262 592 IPR032675 -
Gso12g0061 945 ProSitePatterns Tyrosine protein kinases specific active-site signature. 794 806 IPR008266 GO:0004672|GO:0006468
Gso12g0061 945 ProSiteProfiles Protein kinase domain profile. 669 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0061 945 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 1 940 - -
Gso12g0061 945 SUPERFAMILY Protein kinase-like (PK-like) 644 938 IPR011009 -
Gso12g0061 945 SUPERFAMILY L domain-like 346 580 - -
Gso12g0061 945 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Gso12g0061 945 Gene3D Ribonuclease Inhibitor 26 109 IPR032675 -
Gso12g0061 945 Pfam Leucine Rich Repeat 519 539 IPR001611 GO:0005515
Gso12g0061 945 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0061 Gso-Chr12 522954 526237 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0061 8 842 Receptor kinase-like Gene Family AT4G08850 39.659 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso12g0061 Pkinase 9.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0061 - - gmx:100813275 1860.88