Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0060 ATGGGCCAGAAGAAGAAAAAGGTGCATGACCATGAACCTGTGTCTTTGAAGCGTGTAAGGGTATCTGAACGAGGTTTTGATTGTTCGGGAGGGCATGCTGGTGACCCTATTGTAATCGGTGACAGTGGTGATGATGTCAGTGAGGCTGAAGAGGGGTTGAGGCATACTGAGAAGAGGTTTCTGGTTGAAAAGGAATGGAAGAGCGAGGAGGGTAAAAGGTGTTCTGTATTTGTTGATAAAGTTGATAACTTTGGCAATGATGACTATGCTTGCGTACCTGAAAACCGGGTAATTTTGCCGGATGATTCATATGGGGATAATCAGAGTGAGAAGGAACATTGCGCGGATAAAAGTGGTTCAGATGATTCTTTTTTGTGTTTAACGGAGAGTGAGGATGGCGCCACCAGTGATGAAGATTTTCAGGTTGATTATGATGAGAATGATTGCTGCTCGAGCAGTGAGGACAGTGATTCTTCTTCTTATGATGATGATGAGAGAGGGGGATACAGCAAGACGGTGAAGGAGAGGGTGAGAAAGGTGGAGGGTGAAACTGAAAGTAGTGGAGTTTGCAAAAGAAAAGGTGGAAGGAAAGATAATGAAGAGGGGGAGCAATGGATTGGTGCTGACTGTGCTAGTGCAACCTCTAGTAAATCTGAGATTTATAAGCAGGAAGCAAGGAATGCAGCACAGAAACATGAATCAAAGAGAGTCAAAAGTGCCAATGTTGATGCAGAAGTCTTTGGTGATCACTGGAAAAGTTCAGGTTGCTCTATGCCTTCTGAAGCTGAAGCACTAGAGCATAGGAAGAAAAGAGATACAGGTCATCAAAGTGCGTCATTGCAGAAAAAAACAGAATATTCAACTATGATCAAGAAGAATCTTGATGACCATGAAGGAAAAAAGCATCATCACGTCAAAGGAGATTCAGCTAAAGTTGTGACAAAAAAAGACAGGAAGGGAAGAAAGCATAAATATGGGTTTAATAGCAATAAATGTGAGAAGGTACGGGTGGTGGATGATGAAACTGGTGACAAAGATGAGCTGCATGAATTGGAAGAAAAGGATGATGATTTTGGTCAGGGTCAGACTAAGCCATTAGCTTCTAGGGAAACAATCCCTTTGGATTGGAACTTTATGAAGAAAGAACCTATTGAAAATTTGGAGTTTGAGAAGGAGTTAGATATCTTGTGGGGTGAAATGGATATGTTGCTTCGAGGTGAAGAAATTGGGTCTCAGGTTGATAATATTGGAACAAATGAAGCAAGAGAAAATGAAGAAAATTCAGCGTCGCAGTGCAAGCATGATACTATTTTTAATGAGGAAATTGGGATATACTGCAGATGGTGTGGTTGGATTGCCACTGAAATCAAATATATCACTCCACCATTTGTGGATTCTGAAAGATGTTGCAGAAGGGTGTCATCTGGTGGAGGGAACACCTCACAGTTTGATGGGGATCTGTTTAATGATCCTGGTGATGACTCAGAGGCAGTTTGGTCTCACAATGAAGGCACAGTTTGGGACCTTATTCCTGACATAAAACAAAGCTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAATTTGGCAGGAACCACTGACCTTGCCAAATTGAAGAGGGTTGACCCATGTAGTGAAGGTGGGTGCATTGTTTCTCATGCTCCTGGAACAGGAAAGACAAGGTTGACCATGGTTTTTCTTCAGACATATTTGCAATCGTTTCCAAAGTGTCTACCTATTATCATTGCTCCTGCCAACATATTGCTTACATGGGAAGATGAGTTAAGGAAGTGGAACATAGGAATTCCATTCCATAACTTGAACAATTCTGAATTATCGGGAAAAGAGAAACTCATTAATGAAGTTGACTGGTCTGGCAATCAAAAGCAGAATAAGGATGCCATACGTATGGTGAAGTTGTGTTCATGGTACAAAGAGAAGAGCATTCTATTAATCAGCTACAATTTGTATGAGAAGTTAGCAGGATCCACGGCTGAAGGTGATGGGAAAAAAGAGAAGAAAAATAATAAGATGAAAAAAAAGAAGAAACGTGCAAGGCCAAGGGAGTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGCTAGTACTTGATGAAGGGCACACTCCTCGGAATCAGAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAGAACTAAGAAGCGAATCCTTCTTTCGGGGACACCTTTCCAAAACAATTTTTTGGAACTTTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAGCATACCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACAAATGCAGGAAAGGAAAGATGTGAGCTGGGATTGGGAACCTGTTTCGTCTGGAAATACAGCTGATGAGAAAATAAAACTGCTAAAATTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAAAAGAACCTTCCTGGGTTGAGAGATTGTGTGCTGGTTTTGAAGCCAGACATTTTGCAGCAAGAAACTCTAGAGAGCATTGAATATTCTCAAAGTGCACTGAACTTTGAACACAAGTTGGCCTTGGTCTCTGTCCATCCATCCCTTTTCCTCAACTGCTCTCTGTCAAAAAAAGAAGAATCTGTTGTTGACAAGGGTAAGTTGGAAAAGCTTAGATTGAACCCTTATGGAGGGGTCAAAACCAAATTTCTGTTTGAGTTTATAAGACTATGTGATGCAGTTAATGAGAAAGTCCTCATTTTCAGCCAATTCATTGATACCTTATGCTTAATTAAGGACCAACTTGAGTCAGCCTTCAATTGGTCTGTGGGGACAGAAGTGCTGTATATGTATGGAAAGCTTGACCATAAGCAAAAACAGTCCCTCATTCGTAGTTTCAATGATTCAAATAGCCAAGCAAAGGTGCTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAATTGGAGCTTCAAGGGTTGTGCTTCTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGTCGAGCATATAGACTTGGACAAAAGAGGGTTGTTTTCACATATCATCTTCTTGCACAGGGCACCCCTGAATGCACAAAATATTGTAAACAAGCAGAAAAGAACCGGTTATCTGAACTTGTTTTCTCAAATAGAAATGCTGAAAGTCATAAGCTCAAGAGTAGTGGAGTAATGCTTGAGGATATTGAGGATAGAGTTCTTGATCTCATGGTTCAGCATAAAAAACTCAAGGATATGTTTGGTGAATGTCTGGTTCAACCAAAGGAGAGATATTTGGAGACTTTGGGCCCTTGA 3330 0.4063 MGQKKKKVHDHEPVSLKRVRVSERGFDCSGGHAGDPIVIGDSGDDVSEAEEGLRHTEKRFLVEKEWKSEEGKRCSVFVDKVDNFGNDDYACVPENRVILPDDSYGDNQSEKEHCADKSGSDDSFLCLTESEDGATSDEDFQVDYDENDCCSSSEDSDSSSYDDDERGGYSKTVKERVRKVEGETESSGVCKRKGGRKDNEEGEQWIGADCASATSSKSEIYKQEARNAAQKHESKRVKSANVDAEVFGDHWKSSGCSMPSEAEALEHRKKRDTGHQSASLQKKTEYSTMIKKNLDDHEGKKHHHVKGDSAKVVTKKDRKGRKHKYGFNSNKCEKVRVVDDETGDKDELHELEEKDDDFGQGQTKPLASRETIPLDWNFMKKEPIENLEFEKELDILWGEMDMLLRGEEIGSQVDNIGTNEARENEENSASQCKHDTIFNEEIGIYCRWCGWIATEIKYITPPFVDSERCCRRVSSGGGNTSQFDGDLFNDPGDDSEAVWSHNEGTVWDLIPDIKQSLYPHQQEGFEFIWTNLAGTTDLAKLKRVDPCSEGGCIVSHAPGTGKTRLTMVFLQTYLQSFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNSELSGKEKLINEVDWSGNQKQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGSTAEGDGKKEKKNNKMKKKKKRARPREYIESGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTKKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRQMQERKDVSWDWEPVSSGNTADEKIKLLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDILQQETLESIEYSQSALNFEHKLALVSVHPSLFLNCSLSKKEESVVDKGKLEKLRLNPYGGVKTKFLFEFIRLCDAVNEKVLIFSQFIDTLCLIKDQLESAFNWSVGTEVLYMYGKLDHKQKQSLIRSFNDSNSQAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKRVVFTYHLLAQGTPECTKYCKQAEKNRLSELVFSNRNAESHKLKSSGVMLEDIEDRVLDLMVQHKKLKDMFGECLVQPKERYLETLGP* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0060 1109 MobiDBLite consensus disorder prediction 105 119 - -
Gso12g0060 1109 MobiDBLite consensus disorder prediction 32 53 - -
Gso12g0060 1109 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 907 1075 IPR001650 -
Gso12g0060 1109 Coils Coil 1071 1091 - -
Gso12g0060 1109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 543 761 IPR014001 -
Gso12g0060 1109 MobiDBLite consensus disorder prediction 162 204 - -
Gso12g0060 1109 CDD SF2_C_SNF 876 1030 - -
Gso12g0060 1109 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1105 IPR044567 GO:0080188
Gso12g0060 1109 SMART ultradead3 513 769 IPR014001 -
Gso12g0060 1109 MobiDBLite consensus disorder prediction 288 315 - -
Gso12g0060 1109 MobiDBLite consensus disorder prediction 262 278 - -
Gso12g0060 1109 Gene3D - 826 1096 IPR027417 -
Gso12g0060 1109 MobiDBLite consensus disorder prediction 132 161 - -
Gso12g0060 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 1066 IPR027417 -
Gso12g0060 1109 SMART helicmild6 934 1019 IPR001650 -
Gso12g0060 1109 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 19 1105 - -
Gso12g0060 1109 Gene3D - 495 805 IPR038718 -
Gso12g0060 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 787 IPR027417 -
Gso12g0060 1109 Pfam SNF2-related domain 528 846 IPR000330 GO:0005524|GO:0140658
Gso12g0060 1109 MobiDBLite consensus disorder prediction 668 690 - -
Gso12g0060 1109 Pfam Helicase conserved C-terminal domain 912 1019 IPR001650 -
Gso12g0060 1109 MobiDBLite consensus disorder prediction 224 245 - -
Gso12g0060 1109 MobiDBLite consensus disorder prediction 98 326 - -
Gso12g0060 1109 MobiDBLite consensus disorder prediction 209 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0060 Gso-Chr12 514737 518778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0060 917 1065 RAD5 or RAD16-like Gene Family AT5G43530 36.913 4.38e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso12g0060 SNF2_N 8.9e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0060 K10875 - gmx:100812737 2185.99