Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0056 ATGGTTTCCCACACTCTTCATCAACCCACCGCAGGCATCGTCAAGCAACTTCGACTCGAGAACTTCATGTGCCATTCCAAACACGAGACCGAGTTCGGAAACCACGTCAATTTCATCACCGGTCAAAACGGAAGTGGTAAGAGTACAATCCTAGCTGCACTGTGTGTTGCATTTGGCTGTCGAGCCAAAGAGACTCAAAGGACTTCCACTTTGAAGGATTTCATTAAAACTGGCGCCACTGATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGGGAGGGTGCTTTTAAACCTGAAATATATGGTCCTGTTATCATCGTAGAACGTAGGATATCTGAATCAACAAGTTCTGCTACATTAAAAGACCACCAAGGAAGGAAGGTTGTCAGTTGGAAAACAGATCTTCTAGAAATCGTTGAACATTTTAATGATGCAGTAAGCCGAAAAATCAGCTTGGACCCTCTAGTTGATTTTGCTGAGGCACATGGATCACAGCGGATATTCATCACTCCACATGATACTAGTTCGGTGAGGGCAGGGGACAGGATAAAGAAGGTGCAAATAGCCGCTCCACGTTCTTGA 582 0.445 MVSHTLHQPTAGIVKQLRLENFMCHSKHETEFGNHVNFITGQNGSGKSTILAALCVAFGCRAKETQRTSTLKDFIKTGATDAVIQVEIQNEGEGAFKPEIYGPVIIVERRISESTSSATLKDHQGRKVVSWKTDLLEIVEHFNDAVSRKISLDPLVDFAEAHGSQRIFITPHDTSSVRAGDRIKKVQIAAPRS* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0056 193 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 10 143 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Gso12g0056 193 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 142 193 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Gso12g0056 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 150 IPR027417 -
Gso12g0056 193 Pfam AAA domain 16 141 IPR038729 GO:0140664
Gso12g0056 193 Gene3D - 13 169 IPR027417 -
Gso12g0056 193 CDD ABC_SMC6_euk 14 193 - -
Gso12g0056 193 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 142 193 - -
Gso12g0056 193 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 10 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0056 Gso-Chr12 486246 490110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0056 142 193 Structural Maintenance of Chromosomes family AT5G07660 67.308 1.86e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0056 K22804 - gmx:100811664 289.656