Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0051 ATGGACGCCGTCGACTCAACCCCAAATCCCCCTCCCCTCCCTACCTACGATCCATCAGAGTATCACAACCCGCCGCAACATCAATCGGAAACCGGGCAAAACGGTAACGGCACCAACCTCGGAAAACCATCGGAGAACGGCAGTCAGGTCGCTGCCGACAACAACGGCTTGAATCCTCAGATTTCGAAGCCATTGCTATCCGAAGGATTGACGCGGAGCGGCACCGACAGGGATCAATCCGGCGGCGAGGAGGAGACCACCAGCAAGCGCCGCCGCCGCAGTCGGTGGGACCCGCAGCCGGAATCGAATGAACAGAGCGGCGGCGATTCGGGGACCGGACCGAAGAAGAGGAAGTCTCGTTGGGCCGATGACGACCCTAAACCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAATTCGATCCCGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGAATGTTACAGTCAGGTTTACCCTTAGATGATCGCCCTGAAGGTGCTCGTTCCCCTTCGCCTGAACCTATATATGATAACATGGGCATTAGAATTAACACTAGGGAATATCGTGCGCGTGAGAGATTGCAAAAGGAGAGGCAGGAAATTATATCTCAGATTATAAAGAAGAATCCTGCGTTTAAGCCACCTGTGGATTATAGGCCGCCCAAGCTTCAGAAGAAGCTTTATATACCGATGAAGGAATACCCTGGTTACAATTTCATTGGACTTATTATTGGTCCTCGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACCGGTGCTAAAATTGTGATTCGTGGTAAGGGATCGGTGAAAGAGGGTAGGCTTCAGCAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAGGATTTGCATGTGTTAGTAGAGGCTGAGACGCCGGAGTCACTTGAGGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTATTGAATGAGCACAAGAGGCAACAGCTTAGGGAGCTTGCTGCGTTGAATGGGACGATCAGGGACGAGGAGTATTGCAGGTTGTGTGGTGAGCCTGGTCATCGCCAATATGCATGTCCTACTAGGACTTCAACGTTTAAGAGTGAAGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCGACTGGGAAGAAGATGGATGATGAGTATCAGAATTTCCTTGCAGAGTTGGGAGGTTCGGTTCCTGAATCTGCAACAAAGCAAACCAGTACATTGGCAATTGGTGCAGGCACTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTACTGCAGGCAGTGCACCTCAAGCTGGCTTAGGGGCTGCTGCAATTAAGAAGGAAATTGATGATACGAATTTGTACATAGGGTACTTGCCGCCCACTCTTGATGACGATGGCCTGATCCAATTATTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATCAAGGATCGAATGTCGGGTTTAAGTAAAGGATATGGTTTTGTGAAGTATGCTGATATTACAATGGCAAACAATGCAATCTTGGCCATGAACGGTTATCGCCTTGAGGGTCGAACAATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGACCACCGGCATCTGCTGTGCCAACTTATCCTGTTCCAAGTCAGCCACTTGGTGCATATCCATCCCAACAGTATGCTGCCGGTGGCCCCATTGGGACTGCTCCTCCTGGGAGTTACGGTGGTACCCCAGTGCCATGGGGACCCCCTGTTCCTCCTCCATATGCTCCCTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCACCTATGCAAGGTCAACCTATGCCTCCTTATGGGGTTCAATATCCCCCTCCTGTGCCGACTGGCCCTCCCGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAAGTGCAGCAGAGTTACCCTCCCGGAGTGCAGTCTGACAACAGTACCTCTACTCAGTCTATACCAGCTAATGTATATGGTAATTCGGGACCTCCAATGCCACCTCAACCTACATATCCTGCATCTTATGGATATCCACCTTACTATAATGCAGTTCCTCCGCCACCTCCCCCTTCTGCCCCCATGCCTGTTTCAACTTCAGATCAATCCCACAACATTGCAAATGTGCCTTGGGCCAGTAATTCTCTAGTCCCACCTCCTGCTTCATCGGCAGACAATCAATCCCAGAGCATTGGAAATGTGCCTAGGGCCGCAAATCCATCAGTGCCTCCTCCTGCTTCATCAGCTGATTCAGAGTATGAAAAGTTCATGGCAGAGATGAAATGA 2343 0.5049 MDAVDSTPNPPPLPTYDPSEYHNPPQHQSETGQNGNGTNLGKPSENGSQVAADNNGLNPQISKPLLSEGLTRSGTDRDQSGGEEETTSKRRRRSRWDPQPESNEQSGGDSGTGPKKRKSRWADDDPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPVDYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGAGTSGSNPPWANNSGTAGSAPQAGLGAAAIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYAAGGPIGTAPPGSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPPVPTGPPGAPSQPATSSEVQQSYPPGVQSDNSTSTQSIPANVYGNSGPPMPPQPTYPASYGYPPYYNAVPPPPPPSAPMPVSTSDQSHNIANVPWASNSLVPPPASSADNQSQSIGNVPRAANPSVPPPASSADSEYEKFMAEMK* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0051 780 ProSiteProfiles Type-1 KH domain profile. 243 315 - -
Gso12g0051 780 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 228 354 IPR036612 GO:0003723
Gso12g0051 780 MobiDBLite consensus disorder prediction 616 780 - -
Gso12g0051 780 MobiDBLite consensus disorder prediction 273 294 - -
Gso12g0051 780 SUPERFAMILY Retrovirus zinc finger-like domains 346 392 IPR036875 GO:0003676|GO:0008270
Gso12g0051 780 MobiDBLite consensus disorder prediction 716 755 - -
Gso12g0051 780 CDD SF1_like-KH 229 345 - -
Gso12g0051 780 Gene3D K Homology domain, type 1 220 348 IPR036612 GO:0003723
Gso12g0051 780 Gene3D - 434 547 IPR012677 -
Gso12g0051 780 MobiDBLite consensus disorder prediction 111 127 - -
Gso12g0051 780 MobiDBLite consensus disorder prediction 680 715 - -
Gso12g0051 780 Gene3D - 142 219 - -
Gso12g0051 780 ProSiteProfiles Zinc finger CCHC-type profile. 376 390 IPR001878 GO:0003676|GO:0008270
Gso12g0051 780 SUPERFAMILY RNA-binding domain, RBD 462 553 IPR035979 GO:0003676
Gso12g0051 780 PANTHER RNA-BINDING PROTEIN RELATED 43 780 IPR045071 -
Gso12g0051 780 Pfam Splicing factor 1 helix-hairpin domain 117 224 IPR032570 -
Gso12g0051 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 536 IPR000504 GO:0003723
Gso12g0051 780 Gene3D - 349 401 - -
Gso12g0051 780 MobiDBLite consensus disorder prediction 616 645 - -
Gso12g0051 780 SMART c2hcfinal6 375 391 IPR001878 GO:0003676|GO:0008270
Gso12g0051 780 SMART c2hcfinal6 349 365 IPR001878 GO:0003676|GO:0008270
Gso12g0051 780 MobiDBLite consensus disorder prediction 427 446 - -
Gso12g0051 780 ProSiteProfiles Zinc finger CCHC-type profile. 350 364 IPR001878 GO:0003676|GO:0008270
Gso12g0051 780 MobiDBLite consensus disorder prediction 77 99 - -
Gso12g0051 780 MobiDBLite consensus disorder prediction 646 678 - -
Gso12g0051 780 MobiDBLite consensus disorder prediction 21 76 - -
Gso12g0051 780 Pfam KH domain 243 316 IPR004088 GO:0003723
Gso12g0051 780 MobiDBLite consensus disorder prediction 1 132 - -
Gso12g0051 780 MobiDBLite consensus disorder prediction 162 183 - -
Gso12g0051 780 SMART rrm1_1 466 539 IPR000504 GO:0003723
Gso12g0051 780 SMART kh_6 228 320 IPR004087 GO:0003676
Gso12g0051 780 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 43 780 - -
Gso12g0051 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 543 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0051 Gso-Chr12 438787 443584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0051 465 672 Eukaryotic Initiation Factors Gene Family AT3G16380 25.806 3.99e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0051 K13095 - gmx:100800982 1373.61