Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0046 ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATGCTGCACCTGTAACAAAGTCTAGACTGGGTGTGCATTCCAGTTTGTTGCCTTACTCCCATGCTGGGACAACCTTTACACATGGAATGTTATTGACTATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGATGTTGGCCATGGGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGCCGTGATAAGGTATATCAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGGCCTGTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCTGCTGCGGAATTTCTGCCCATGATTAATGAGGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGTATTGGGATTTGGTGGGGCAACATGTTCATGATGTTCTGAAGGGCTATCCGCGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCAGACTGACGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCGGCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAG 1170 0.4111 MDLKSNHTPVLTDAAPVTKSRLGVHSSLLPYSHAGTTFTHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPARKITKDVGHGFASSDSETAGAYFSWLLKYPSALASFDQIMNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIRSTDKQGKEVNLFQPAAEFLPMINEVLNSLEECTKDIKGAKVENNKFCVSVHYRNVDEKYWDLVGQHVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDQTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVLWKSSTLKSLI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0046 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
Gso12g0046 389 SUPERFAMILY HAD-like 122 380 IPR036412 -
Gso12g0046 389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 341 IPR006379 -
Gso12g0046 389 CDD HAD_TPP 122 372 - -
Gso12g0046 389 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Gso12g0046 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Gso12g0046 389 Coils Coil 229 249 - -
Gso12g0046 389 TIGRFAM T6PP: trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
Gso12g0046 389 Gene3D - 219 387 IPR023214 -
Gso12g0046 389 Gene3D - 121 213 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0046 Gso-Chr12 399545 405250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0046 115 377 Trehalose Biosynthesis Gene Families AT1G70290 26.071 2.01e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0046 K01087 - gmx:100819495 787.719