Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0043 ATGAATACTTTTACTCATGTCCCCCCCGGTTTCAGGTTCCATCCTACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAATTACTTCAGGGAGGATTGACCTAGATGTCATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACAGAAGAACAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACGAATAGAGCGACTGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCCAAGCATGAGCTGATAGGCATGAGGAAGACCTTAGTCTTTTATAAAGGTCGAGCTCCAAATGGACAAAAGTCAGATTGGATAATGCACGAGTATCGGCTTGAAACAGATGAAAATGGCACTCCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACCATGCGTAAAGTGAGTGAGCATGACTCCCCCTGTTGGTATGATGACCAAGTCCCTTTCATGCTTGACTTAGACTCACCAAAGCAAACCTCTCAATCTAATTTGGTCTACCAGCTACCATATCCTTGCAAGCAAGAGCTAGATTTGCCATACCAATTGCCTCGTGACCACTTTCTCCAGCTTCCACTTCTAGAGAGCCCAAAACTGCTTCAATCTGCTTCTGCTATAACCCCTAATAATCCCATGGCAGCATATGTTCTAGACCATGTAAACCACTCAACTTCTCTGCTTCCCCCATCCCTCATACAAGAAGAACAGCAAAACTTTCAGGCAACCTATGGCAACAGCAATTCCAATGAACAAGCAGTGGATCCAGTAATTGATTGGCGAGTGCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGCTTCCAAAGACAATATCTTTCAAGGCACGGACAATAGCAATGTACAGTTCAGACATCTGGACAAACAAGAGCTAGTGGTGCCTGAACAAAATGCATCAATATCAAACTCCAGCTGCCCAATTGATTTGTGGAAATAG 1044 0.4262 MNTFTHVPPGFRFHPTDEELVDYYLRKKITSGRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRVTTMRKVSEHDSPCWYDDQVPFMLDLDSPKQTSQSNLVYQLPYPCKQELDLPYQLPRDHFLQLPLLESPKLLQSASAITPNNPMAAYVLDHVNHSTSLLPPSLIQEEQQNFQATYGNSNSNEQAVDPVIDWRVLDKFVASQLSQDASKDNIFQGTDNSNVQFRHLDKQELVVPEQNASISNSSCPIDLWK* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0043 347 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Gso12g0043 347 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Gso12g0043 347 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 334 - -
Gso12g0043 347 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Gso12g0043 347 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Gso12g0043 347 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0043 Gso-Chr12 372905 377667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0043 1 347 NAC Transcription Factor Family AT1G12260 56.757 1.05e-133 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g0043 NAM 2.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0043 - - gmx:100809525 709.909