Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0040 ATGGAAGCCATTTCTCCTAAGCATCTTATGACATCCCTTGTAATAATTATAGCTTCTAGTTTGACCGCACACTGTGGCTGTGCCAAGAGAGGGGGTGAAAGACCATACAAAGAAGCCAACACACTGTTCATAAGAACATCATGCAGCTCCACAACATATCCAAGACTCTGCTACAGCTCCTTAGTGAAGCATGCAGACTTGATCCAAACAAATCGTGTGGTTCTGACAGGCGCAGCCCTGAATGTGACTCTTGCGTCAGTGAAATCGACATCGGCAATGATGTCAACGCTGGCAAAGAAGCAGGGGCTGAAGCCAAGAGAGGTTGCAGCGATGCAGGACTGTGTGGAGCAGCTGAGTGACACTGTGGATGAACTGAGAAGGTCTATTGCTGAGATGAGTGATCTAAGAGCTTCCAATTTTGAGATGATAATGAGTGATGTACAAACATGGGTGAGTGCCGCTTTGACGGATGAAACCACCTGCAACGATGGCTTCCAAGAGATCACTGCTGCCACTGATATTAAAAGCACCGTCAGAAGACTCGTTATTCAGGTAGCTCAATTGACTAGCAATGCCTTGGCTTTGATAAATAAGCTAGCCAATTCTTAA 609 0.4598 MEAISPKHLMTSLVIIIASSLTAHCGCAKRGGERPYKEANTLFIRTSCSSTTYPRLCYSSLVKHADLIQTNRVVLTGAALNVTLASVKSTSAMMSTLAKKQGLKPREVAAMQDCVEQLSDTVDELRRSIAEMSDLRASNFEMIMSDVQTWVSAALTDETTCNDGFQEITAATDIKSTVRRLVIQVAQLTSNALALINKLANS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0040 202 PANTHER 21 KDA PROTEIN-LIKE 12 200 - -
Gso12g0040 202 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Gso12g0040 202 Pfam Plant invertase/pectin methylesterase inhibitor 43 195 IPR006501 GO:0004857
Gso12g0040 202 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 200 - -
Gso12g0040 202 SMART PMEI_2 39 195 IPR006501 GO:0004857
Gso12g0040 202 CDD PMEI-like_3 46 201 - -
Gso12g0040 202 Coils Coil 108 135 - -
Gso12g0040 202 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 199 IPR035513 -
Gso12g0040 202 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0040 Gso-Chr12 348632 349675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0040 44 199 Carbohydrate Esterase AT1G53830 32.278 2.94e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0040 - - gmx:100802601 388.652