Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0039 ATGGCATTGCAGCACGGTGTGATTGGAAGTTCAAGATCTTCCCAAAATCTCTTTAGAATAGTTGTATCCCTTCTACTCATCTTAACCTTTCTCCAATTAGCAGCATCTGCATCTGCATCCACATCCACAACTGATTCCCTCAAAGCCTACAAAAAGTTCATAAAAGACAAGTGCAATTCAACCACTTTCCCAAAGGTTTGCTACAAGTCTCTGTCCCCTTATGCATCAAAAATAAAAAGAAACCGCGTAACACTCACCAAAGTGTCTATTTACGTGGCTCTAAAAGCAGCCAAGATTGCATACAGCACACTGACGAAGCTTTCCAAATCGAAGGGGAAGCTAACACATGGTGAAGCTTCGGTGATTGCTGATTGCCGAGAGAACATTGATGAGACGTTGGATCTGCTTTCACAATCTTCTGATGGGCTTGCAAATTTGAATGGCACATCTTCTGCTCATGACCAATTCCAATGGGACAACATAAAGACATGGATGAGTGCTGCCATAACAGATGAGGGTACATGCACCGATGAGTTTGACGAAATACAAGTGCGCCCTTCACTGCAGAAGAAGATCAAAACCACCGTTTATAACCTTTCTTGGTTCACTATCAATGCCTTGGCCCTCGTCAATAGGCTTTACTAA 645 0.4279 MALQHGVIGSSRSSQNLFRIVVSLLLILTFLQLAASASASTSTTDSLKAYKKFIKDKCNSTTFPKVCYKSLSPYASKIKRNRVTLTKVSIYVALKAAKIAYSTLTKLSKSKGKLTHGEASVIADCRENIDETLDLLSQSSDGLANLNGTSSAHDQFQWDNIKTWMSAAITDEGTCTDEFDEIQVRPSLQKKIKTTVYNLSWFTINALALVNRLY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0039 214 SMART PMEI_2 49 209 IPR006501 GO:0004857
Gso12g0039 214 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 213 IPR035513 -
Gso12g0039 214 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 213 IPR035513 -
Gso12g0039 214 CDD PMEI-like_3 58 213 - -
Gso12g0039 214 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 12 214 - -
Gso12g0039 214 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 212 IPR006501 GO:0004857
Gso12g0039 214 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 214 - -
Gso12g0039 214 Pfam Plant invertase/pectin methylesterase inhibitor 52 209 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0039 Gso-Chr12 345797 346556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0039 54 213 Carbohydrate Esterase AT1G53830 28.750 1.14e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0039 - - gmx:100527377 391.734