Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0038 ATGACAATGATGGGAAAGACATTGTTAACATTGTTATTACTGTCCTCAGTTTTCTCAATTGCCTCATCAAGAAGAAGACATTCCAACAACAGCAACATAGATTGGTGGTGCAACCAAACCCCATACCCCGAGACATGCAAATACTACGTGAAACACAGCCACTACCATTACAAACTCAAACACAAATCCGAATTCCGAACAATTCTAGTTCACTTGGCCTTGGAGAGAGCAGTGATCATGCGAAGGAAAGCACGCGAGTTGGGGCGAAACGGTGTCACCAAGAAGCAGAAGTCAGTGTTCCGTGATTGTTTGAAGCTCTATGACAACACCGTTTTCCATCTAAACCGTACCCTTGAAGGCCTTCACGTGAAGAGAAGCTGTTCACCCTTTGATGCACAAACGTGGCTCAGCACGGCTCGCACAAACATTGAAACATGTCAAAACGGGGCCTTAGAACTTGGCGTTCGAGATTCCATGGTTCCCACTGAGAGATGCAATTTGACTGAGATTATAAGCAATGGCTTATTCGTGAATTGGGCTTTCCTGAAGTACAAAGAGGCTCATTACACAGCAGATGCAGAAGATGGTTTTCCAAGATGGTTTTCGATGCATGAGAGGAAGCTGTTGCAGTCTTCTTCTTCAATAAGGGCACATCTAGTGGTGGCCAAAGATGGTTCGGGGCATTTCAGGAGTATCCAAGCTGCTATCAATGCCGCGGCAAGAAGAAGGTTCAAGAGCAGGTTCATTATACATGTTAAGAGAGGAGTTTATAGAGAGAATATTGAGGTTGACAAGACCAATGACAACGTTATGTTGGTCGGTGATGGCATGAGAAATACCATAATAACAAGTGGCAGGAGCGTTCGAGCTGGTTATACCACCTATAGCTCCGCAACAGCAGGAATTGATGGTCTTCACTTCATTGCACGAGACATTACCTTCAGAAACACGGCAGGTCCTCTGAAGGGTCAGGCAGTGGCACTTCGATCAGCCTCTGACCTCTCCGTGTTCTATCGCTGTGCCATTGAGGGCTACCAAGACACCCTCATGGTCCATGCACAACGACAATTTTACAGAGGATGTTACATATATGGAACCGTTGACTTCATATTTGGCAATGCTGCTGTCGTTTTCCAAAACTGTGTGATTCTTGTAAGAAGACCCTTAAATGGGCAAGCAAACATGATCACGGCCCAAGGTCGAGATGACCCATTTCAGAACACGGGGTTTTCAATTCACAATTCTCAGATCAGGGCTGCACCAGACCTCAGGCCCGTTGTTGGCAAGTTCAACACGTTCTTGGGCCGCCCTTGGCAACGATACTCAAGAGTTGTGGTCATGAAATCGTTCTTGGATAGCTTGGTGAGCCCAAGGGGTTGGTCTCCATGGGGGGACTCTAATTTTGCATTGAATACTCTGTATTATGGAGAGTACCGGAACTTTGGGCCCGGTTCATCCACAAGAAACCGGGTACGATGGCCCGGTTTTCATAGAATAAGTAGCCCAGCTGAGGCATCACGATTCACCGTTGCTAACATCCTTGCTGGCCGCACATGGTTGCCTGCCACTGGTGTGCCATTCACTTCTGGCCTTTGA 1596 0.4693 MTMMGKTLLTLLLLSSVFSIASSRRRHSNNSNIDWWCNQTPYPETCKYYVKHSHYHYKLKHKSEFRTILVHLALERAVIMRRKARELGRNGVTKKQKSVFRDCLKLYDNTVFHLNRTLEGLHVKRSCSPFDAQTWLSTARTNIETCQNGALELGVRDSMVPTERCNLTEIISNGLFVNWAFLKYKEAHYTADAEDGFPRWFSMHERKLLQSSSSIRAHLVVAKDGSGHFRSIQAAINAAARRRFKSRFIIHVKRGVYRENIEVDKTNDNVMLVGDGMRNTIITSGRSVRAGYTTYSSATAGIDGLHFIARDITFRNTAGPLKGQAVALRSASDLSVFYRCAIEGYQDTLMVHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRRPLNGQANMITAQGRDDPFQNTGFSIHNSQIRAAPDLRPVVGKFNTFLGRPWQRYSRVVVMKSFLDSLVSPRGWSPWGDSNFALNTLYYGEYRNFGPGSSTRNRVRWPGFHRISSPAEASRFTVANILAGRTWLPATGVPFTSGL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0038 531 PANTHER PECTINESTERASE 1 530 - -
Gso12g0038 531 SMART PMEI_2 28 177 IPR006501 GO:0004857
Gso12g0038 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 178 IPR035513 -
Gso12g0038 531 Pfam Pectinesterase 219 516 IPR000070 GO:0030599|GO:0042545
Gso12g0038 531 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 178 IPR006501 GO:0004857
Gso12g0038 531 SUPERFAMILY Pectin lyase-like 214 530 IPR011050 -
Gso12g0038 531 Gene3D - 212 531 IPR012334 -
Gso12g0038 531 Pfam Plant invertase/pectin methylesterase inhibitor 32 175 IPR006501 GO:0004857
Gso12g0038 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Gso12g0038 531 PANTHER PECTINESTERASE 1 530 - -
Gso12g0038 531 CDD PMEI-like_3 35 178 - -
Gso12g0038 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0038 Gso-Chr12 337792 340188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0038 28 531 Carbohydrate Esterase AT3G47400 60.659 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0038 K01051 - gmx:100807908 1035.79