Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0031 ATGAGACGAGACATGGCTTATGCTGCAATGAAACCCACTAAGCCCGGCTTGGAGGAGTCACAGGAGCAAATCCATAAGATTAGAATCACCCTTTCCTCTAAGAACGTCAAGAATCTCGAGAAGGTTTGTGCTGACCTGGTTCGTGGTGCCAAGGACAAGCATCTCAGGGTGAAGGGACCTGTTAGGATGCCAACTAAAGTTCTTAACATCACCACCAGAAAATCCCCCTGTGGTGAAGGCACCAACACATGGGACAGATTTGAGCTGCGTGTACACAAAAGAGTCATTGACCTCTACAGTTCCCCTGATGTGGTTAAGCAGATAACCTCGATCACAATTGAACCTGGTGTCGAGGTTGAGGTGACTATTGCAGATGCTTGA 381 0.4777 MRRDMAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0031 126 Hamap 30S ribosomal protein S10 [rpsJ]. 24 123 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gso12g0031 126 SUPERFAMILY Ribosomal protein S10 26 123 IPR036838 -
Gso12g0031 126 SMART Ribosomal_S10_2 28 122 IPR027486 -
Gso12g0031 126 TIGRFAM uS10_euk_arch: ribosomal protein uS10 25 123 IPR005729 GO:0003735|GO:0006412|GO:0015935
Gso12g0031 126 PANTHER RIBOSOMAL PROTEIN S10-RELATED 5 125 - -
Gso12g0031 126 PRINTS Ribosomal protein S10 family signature 26 39 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gso12g0031 126 PRINTS Ribosomal protein S10 family signature 61 76 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gso12g0031 126 PRINTS Ribosomal protein S10 family signature 83 97 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gso12g0031 126 Gene3D Ribosomal protein S10 domain 10 125 IPR036838 -
Gso12g0031 126 Pfam Ribosomal protein S10p/S20e 28 122 IPR027486 -
Gso12g0031 126 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 5 125 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0031 Gso-Chr12 287348 288623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0031 5 126 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 90.164 3.50e-78 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0031 K02969 - gmx:100813093 253.062