Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0028 ATGGTCGTCAACGAGAGACCCTCCAAGAGGATGAAGAGAAGGGTCACAGCTGATCTTCGTGATTTTCTTACTTTTCCCGAGCCTGGCGTCACTGCCTCCGGCCAACCCTTCCGGAACTGTGTACAGCGGTTCCTCTCTGACCATGCGCGAATCACTTTCCCTCCCTCGCTCTTTCCGTCACTCATGACGTGGCAGATCTTGTTCCGTGTCGGAGACATCGTCAGTGGGCCCGATCTCTCGCCGGCTATGGTCACTCTCGATATTGTTGAGGAGGACGTCACTCGTTGCCGTACTTCCGTCTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTGTGTCGAAAACGATACCATTTCATAATAAGGGCTGCGAGTGATGCCGTCGAAGCATATCAAAGACCATGTTCAAGATGTGGAAATCTTCTCCAATTATCTGAAACAAGGTGTAGATCGTGTAACTTTGCCATCACCGTTGATGACCTTGAGGATTGGGTGTATCTTCAGATTGAAGATAACACCCATCTTCTGCATGGTGTCGTGCATGCCAATGGTTATGGGCACCTGCTCACTCTCAATGGAAGAGAAGGTGGCTCGAAGCTTCTCTCTGGATTTGATATCATGAATTTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGATTGCTTCATGCAATCACCAACGGGCATTCCTGGTATGGCAATTGGGGTTATCAATTTGGAACTGGCAGCTATGCTCTTACCCAAAATGCTTACAAGAATGCAGTGAATACCCTGTCGAGCATGCTCTTGTCCTCATTTTCATTCCATGGTCGGGGACCAAGAAGCCGCCTGGAGTGTGTCATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTTTGACGATTAAAGATCTATTTTCCTTTTTGTTGACATTGATTCTTGAATGTCGTAAGCCAGTGGCCATGAGGACATCTAAGCAGACCAGTAACTTATTGTGTGCTTGGACGGGAAATGATGTTGAAGACGTGCAACATGCTTTGATCAAGGTTTTGCTTGCATCGGGTGTCTGTACTGAGGCCAAATGGGTGACAAGGCGTACTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAACTTCTAGACTACTGTCTTAAGCACTTGCCGGGAAAATTAGCTGCCAATGGAATGATAGTTTGTTCACGATGCAATCCAATTTCCAGTGCCATCGAATTCAGGTTAGAACCTTGGTGTAATGGATTAAGCACAAATTCAGGCTATCCAACAGATGCTCAACTGATCTCTGATTTGACATTTTTATTTGATTCAATTATTCACCCTGACAAAATGGTGTGCTACAGACCCAAGAATATGAGGAAAAGGGTGGCGGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTCATGAAGGATTACAAGCCATATGAAATGGCTGTTGAACTGCCTTCAGTCATTAGGCTGTTGTGTCATGTGGAGCTTTCTGATCAGCCCAAGGATGATCCATCCCCACCGCCAGAGCTAATTGTGCTTCCTTTGAATGCTACTGTTGCTGACCTCAAGAGTGAAGCCACTAGTGCTTTTCAAGAGGTATATGCAATGTATAAGAGGTTTCAAGCTGAGGAACTCCTAGGGTATGGATCAATCAGTGATTCGCTCACCATAAAGTTCTTGCTTGGAACAAGTGGATCAATTCAAATTCAAGGTAGATGTCCAGCTAAACATGGGCTAAGCCGATTCCGAATGGAACGAGGAACAGAGGTGTGGAAGGTGGATTGCATTTGCGGGGCTAAGGATGACGATGGAGAGAAAATGTTAGCATGTGATACCTGTGGTGTTTGGCAGCACACAAGATGTGCTGGAATTGATAATAATACTGATGGAATGCCGTCTAAGTTTGTTTGTATGAGATGTGTCAACTCGTACCGTGAGGAGACTAAAAAATTACCAACACCTGGTGAGGAAGCTAACGAGACCTGTAAATTCACCACATCTTGCAGAGATGAGGCAGTAGCAAGGGAGTGTGCAACGGTTTCATGTAACATAGCTGTGAATTTTGGTGTACGTTGA 2127 0.4593 MVVNERPSKRMKRRVTADLRDFLTFPEPGVTASGQPFRNCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDIVSGPDLSPAMVTLDIVEEDVTRCRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASDAVEAYQRPCSRCGNLLQLSETRCRSCNFAITVDDLEDWVYLQIEDNTHLLHGVVHANGYGHLLTLNGREGGSKLLSGFDIMNFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAITNGHSWYGNWGYQFGTGSYALTQNAYKNAVNTLSSMLLSSFSFHGRGPRSRLECVISLYQSLAETELLTIKDLFSFLLTLILECRKPVAMRTSKQTSNLLCAWTGNDVEDVQHALIKVLLASGVCTEAKWVTRRTLKGAVCRGVSSPELLDYCLKHLPGKLAANGMIVCSRCNPISSAIEFRLEPWCNGLSTNSGYPTDAQLISDLTFLFDSIIHPDKMVCYRPKNMRKRVADSARKLLDCKQFMKDYKPYEMAVELPSVIRLLCHVELSDQPKDDPSPPPELIVLPLNATVADLKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTIKFLLGTSGSIQIQGRCPAKHGLSRFRMERGTEVWKVDCICGAKDDDGEKMLACDTCGVWQHTRCAGIDNNTDGMPSKFVCMRCVNSYREETKKLPTPGEEANETCKFTTSCRDEAVARECATVSCNIAVNFGVR* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0028 708 ProSitePatterns Uncharacterized protein family UPF0054 signature. 180 190 IPR020549 -
Gso12g0028 708 CDD PHD_MMD1_like 611 657 - -
Gso12g0028 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 664 IPR013083 -
Gso12g0028 708 Pfam PHD-finger 612 659 IPR019787 -
Gso12g0028 708 SMART PHD_3 611 658 IPR001965 -
Gso12g0028 708 ProSiteProfiles Zinc finger PHD-type profile. 609 660 IPR019787 -
Gso12g0028 708 ProSitePatterns Zinc finger PHD-type signature. 612 657 IPR019786 -
Gso12g0028 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 681 - -
Gso12g0028 708 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 681 - -
Gso12g0028 708 SUPERFAMILY FYVE/PHD zinc finger 606 662 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0028 Gso-Chr12 271263 274555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0028 80 657 PHD Transcription Factor Family AT5G22260 27.805 7.99e-83 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso12g0028 PHD 1.7e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0028 - - gmx:100780558 1345.87