Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0027 ATGGGTTCGTCGACCAATGGTGGTGTGCCGCCAGGGTTTAGATTTCATCCAACGGATGAAGAGCTGCTTCATTACTACTTGAAGAAGAAGTTGTCCTTTCAGAAGTTTGACATGGATGTTATTAGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGAAAGATGTAGAATTGGATCTACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCCACAGGTTCAAGGACTAATAGAGCAACGAATGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGTGCATTAGGAATAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTGTTTTACAAAGGAAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTACCGCCTAGAAGATGGCAATGATCCTCAAGGAAGTGCCAATGAAGATGGCTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATTTGTTCAAGATTGTAAATGAAGGTGGGTCTACACATAATCCAGATCAACAAATCAACAATTCATCAAACACTAATGCACGCTCCTATAGAGAAAATCATTACTTACTACATCAACAGCAAAATCCGAGGAACTCATCAGGGCTTGAGCTAGATAAGCCTGAGCTCGCTCTCCATTACCCGCACTTGCAAAACCCTCCATACTCACTCTTCCAATCCCAGCCTCTTCTTCAGATCCAAAAGCCTATGGTTTATGATTATTCATATACATCAGACACCCCTATCATGGCAAAGCAACTCATGACAAACCCTAGAGACTGTGAGAGCGGCAGTGATGGCCTAAGATATCAAGTTTCGGAGTCAGGTATGGAAGTTGGGTCGTGTGAGCCAAATCAAGAAATGGGAACCGGAAGAGGTGAAGGAATAAACGAATGGGGTGTTCTTGATAGGCTAGTGACCTCTCATCTTGGAAATGAGGACTCATCCAAAGGGGTCAGGTTTGAAGAGGCAAATCCACCGTCTGTCCACCAGATCAATCAACTTTCATTACGGGGAGAGATGGACTTCTGGGCCTATGGGAAACAATGA 1071 0.4407 MGSSTNGGVPPGFRFHPTDEELLHYYLKKKLSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPQGSANEDGWVVCRVFKKKNLFKIVNEGGSTHNPDQQINNSSNTNARSYRENHYLLHQQQNPRNSSGLELDKPELALHYPHLQNPPYSLFQSQPLLQIQKPMVYDYSYTSDTPIMAKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPNQEMGTGRGEGINEWGVLDRLVTSHLGNEDSSKGVRFEEANPPSVHQINQLSLRGEMDFWAYGKQ* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0027 356 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Gso12g0027 356 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Gso12g0027 356 PANTHER PROTEIN BEARSKIN2-LIKE 5 275 IPR033519 -
Gso12g0027 356 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
Gso12g0027 356 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Gso12g0027 356 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0027 Gso-Chr12 259929 263597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0027 3 350 NAC Transcription Factor Family AT1G33280 56.389 1.08e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g0027 NAM 5.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0027 - - gmx:100804181 751.125