Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0024 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACGACATACACTAAGGTGTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACAATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCCGTTGTCATCACTGACAAAGCTACTGGAAGATCTAAAGGCTACGGATTTGTTACTTTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATCCTGCTCCTGTAATCGACGGCAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGCAGGGAGGAACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGGGGAGTGGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTACGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGTGGACCTGCTGCAGCTGCAGGAGGGATGATGAGCGGTGGTGCAGCGTTCTACCCATATCTGCAGTACGGAGGAGAAGGGAGTGGCGGCGGCGGTACTTCCGGACAGGGTTATGGTGTGAACTACCCTCCTCAGGCTCATCTTTTTCAGTATTCTCCCATTGCTTCCACCGCTGGCTATGCCCAGCACTATGGTACACCTACTATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCATGCCTCTTCAAGCTCCAATTCCTCATCGCTAG 819 0.5043 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDPAPVIDGRRANCNLASLGVQRSKPSTPKHGGAGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPAAAAGGMMSGGAAFYPYLQYGGEGSGGGGTSGQGYGVNYPPQAHLFQYSPIASTAGYAQHYGTPTMSLAPSPALQSGVTMPLQAPIPHR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0024 272 Gene3D - 7 112 IPR012677 -
Gso12g0024 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Gso12g0024 272 PANTHER BOULE-RELATED 1 267 IPR037366 GO:0003729
Gso12g0024 272 SMART rrm1_1 17 89 IPR000504 GO:0003723
Gso12g0024 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Gso12g0024 272 PANTHER OS01G0876800 PROTEIN 1 267 - -
Gso12g0024 272 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Gso12g0024 272 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0024 Gso-Chr12 225547 231139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0024 12 92 C2H2 Transcription Factor Family AT2G19380 44.444 2.58e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0024 - - gmx:100779046 478.789