Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0023 ATGGATATAGATTACTCATTCAATGCCAATACATGTGAGATAGTAGAAGCAAGAGAAGAGATCATTTGTAAGTTCAAAATAGATGAAAAGCCTGAGAGTAGTTGTGCCCACAAATCAGGCAAAAAGTATTCTATAGAGGATGATATCAATCGTCTTTTGCAGGCTATTGATATTGAAAATTCAGCTAGAGCTCTAAATACACCTGATTCACAAAAGAGTGCTCTTAAAAAGCCTATAAAAATCACTTCATCTCAGACATCTGGAATTGGCCTCTCAGAACCTGTAAGTTTAAAGCAGGCATTTAGAGGGTTGTGCATCTCACATGCATCAAAAATGGCTGCATTGAAGCGATTATCAAAGCCATCCACTTCGTCAAGAGTATCAAAGGTTGGAATATCTAGACCTTCTAATGAATTAGGATGCAATGACAATAATGAGATATCAAATTCAAGTGCTCATCACTCTACTTCTTTTGTTAATGCAACAAACCCAAAACCAATGTCAACCAGATCATCATATCAAAACCAAATTGGCCCTCTTGCATCAGAAGTTCAGGGTGAAAAGCTAGTCACGAGGCTTGAACAACATGTACTAGCAAATTCAACATCTGTTGTTGCCTATTCTAGTAATGAAGTGTTGGAGCTAGATATTAGACTTAAAACGTTTTGTGATTCCTCCAGAAAAGATTCTCTCGGTTCTTCAATGCCAAATAAGGGAATGGAAGCAAACTTAAATTCTCCACCTAGTTCTGGCACAGGTAATGGGGTGGAGAAACCCACAAATAGTATTACATCTTTCGCAAAGCCAATATTTAGGGACAAGAACTTTCATAAAAATAAAGTGAAGCAAGATTTATGTTCTTCGTCGAGCTGCTCCAATCTATGTACCATAAACATTGGCAATGATTTGGCCTTCTGTACAAGTAATTTGAACAAGGTGACTGATAACTCTGATTCAAAGAATGAAATGAAAGAAAAAAGGAAGTTGCCATTCAAACATTCAAACCATAGCATTGAAGTTTACTCAGTTAATGCTAGCATGGATTCAAGCAAACATGGTTTCTGTTTGACTGACAAAAACAGAACTAGGTTTCTAGTGACAAAATTTGATGAGAAATCAAGATCAAAAGAGAAGGGTGAACTCTCACAAAGTCCCAAAAGTAGCACTAGTGATTATCGTAGTATCAGTAAGGAGAAAAATCTAAGTGGTTCCAGTTGCAACGGGCACAGGCCTCACATGTCAAAGCACGCAAGATGGGAAGCAGTTCATGTTATTGAGCAGCAACATGGTCATTTAAGTTGGAGGAACTTCAAGGTCCTCAAAAGACTTGGTCGTGGGGACATTGGAATTGTTTATCTTGCTCAACTAATTGGTACGAGTAGCCTTTTTGCAGTAAAAGTGATGGAGAATGACATTTTAGTAAACCAGAAGAAAACATCGAGGGCTCAAATTGAAAGAGAAATATTGCAAATGCTAGATCATCCGTTTCTTCCTACACTTTATGCCCATTTTACAACGGATAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCAGGTGGAGATTTGCATGTGCTACGCCAAAGGCAACCATCTAAGAGTTTCTCAGAACATGCAACCAGGTTTTATGTTGCTGAAGTTCTCCTTGCCCTGGAGTATTTGCACATGCTAGGAGTTGTATATAGAGACTTGAAGCCAGAAAATATTCTGGTACGAGAAGATGGCCACATTATGCTTACGGATTTTGACTTGTCACTCAGATGTTGGGTTAATCCAGTGTTGGTCAAGTCACCTTCACCAAGTGTGGATCCAACAAAGATGTCTAGTTCTTGTTTAAAGGCTATCTGCATGCACCCTTTCTGTCTTCAACCAAATTGGCATGTCTCCTGTACTCCTATTTTATTATCAGGTGGAGCAAAGCCTCAAAAAACTAAGGCTGAAATAAGTGGTCAGGTTGGTCCACTGCCACAGCTTATAGTGGAGCCTATCAATGCTCGATCAAACTCGTTTGTTGGAACCTATGAATACCTTGCTCCGGAAATCATAAAAGGTGAGGGTCATGGGAGTGCTGTAGATTGGTGGACTTTTGGTATACTATTGTTTGAACTTATATATGGTATAACTCCATTCAAGGGCCCATCATATGAAGATACATTAGCCAATGTTGTGTCACAGAGCCTTAAGTTCCCAGATACTCCTATAGTGAGTTTTCGAGCAAGAGATTTGATCAAACGATTGTTGATAAAAGACCCTAAAAGTCGATTAGGTTTTGTAAAAGGTGCTACTGAGATAAGGCAGCATTCCTTCTTTGAAGGCCTCAATTGGGCTCTTATACGTTGTGCACCACCACCCAAGCTCCTCAAATTTTGTGATTTTGGAACTAGTCTTCAATCCATGAAGAATGCCATCGATTCACAAGATTGTGAAGAGTTTGACATGTTTTAG 2442 0.3907 MDIDYSFNANTCEIVEAREEIICKFKIDEKPESSCAHKSGKKYSIEDDINRLLQAIDIENSARALNTPDSQKSALKKPIKITSSQTSGIGLSEPVSLKQAFRGLCISHASKMAALKRLSKPSTSSRVSKVGISRPSNELGCNDNNEISNSSAHHSTSFVNATNPKPMSTRSSYQNQIGPLASEVQGEKLVTRLEQHVLANSTSVVAYSSNEVLELDIRLKTFCDSSRKDSLGSSMPNKGMEANLNSPPSSGTGNGVEKPTNSITSFAKPIFRDKNFHKNKVKQDLCSSSSCSNLCTINIGNDLAFCTSNLNKVTDNSDSKNEMKEKRKLPFKHSNHSIEVYSVNASMDSSKHGFCLTDKNRTRFLVTKFDEKSRSKEKGELSQSPKSSTSDYRSISKEKNLSGSSCNGHRPHMSKHARWEAVHVIEQQHGHLSWRNFKVLKRLGRGDIGIVYLAQLIGTSSLFAVKVMENDILVNQKKTSRAQIEREILQMLDHPFLPTLYAHFTTDKLSCLVMEYCPGGDLHVLRQRQPSKSFSEHATRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCWVNPVLVKSPSPSVDPTKMSSSCLKAICMHPFCLQPNWHVSCTPILLSGGAKPQKTKAEISGQVGPLPQLIVEPINARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGILLFELIYGITPFKGPSYEDTLANVVSQSLKFPDTPIVSFRARDLIKRLLIKDPKSRLGFVKGATEIRQHSFFEGLNWALIRCAPPPKLLKFCDFGTSLQSMKNAIDSQDCEEFDMF* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0023 813 MobiDBLite consensus disorder prediction 227 259 - -
Gso12g0023 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 558 570 IPR008271 GO:0004672|GO:0006468
Gso12g0023 813 Gene3D Phosphorylase Kinase; domain 1 437 520 - -
Gso12g0023 813 ProSiteProfiles Protein kinase domain profile. 437 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0023 813 Gene3D Transferase(Phosphotransferase) domain 1 521 777 - -
Gso12g0023 813 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 8 813 - -
Gso12g0023 813 SMART serkin_6 437 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0023 813 MobiDBLite consensus disorder prediction 124 173 - -
Gso12g0023 813 MobiDBLite consensus disorder prediction 382 409 - -
Gso12g0023 813 PANTHER FLIPPASE KINASE 1-RELATED 8 813 - -
Gso12g0023 813 CDD STKc_phototropin_like 437 783 - -
Gso12g0023 813 SUPERFAMILY Protein kinase-like (PK-like) 415 788 IPR011009 -
Gso12g0023 813 Pfam Protein kinase domain 437 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0023 813 Pfam Protein kinase domain 666 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0023 813 MobiDBLite consensus disorder prediction 375 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0023 Gso-Chr12 220140 223948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0023 9 792 AGC Kinase Gene Family AT3G52890 42.999 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso12g0023 Pkinase 1.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0023 - - gmx:100802592 1615.9