Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0021 ATGGCCAAGAGTCCCCGTCTCTTTCACTTTTTCCAGTTCTTGGCAATGCTGTTACTCACTTCCTACTCTATTTTTCCACCTTGTGTGTCTCTGACGTTGGAAACCCAAGCTCTTCTTCAGTTCAAGAATCATTTGAAGGATTCCTCGAATTCATTGGCTTCATGGAATGAATCAGACTCTCCATGCAAGTTTTATGGAATTACATGTGATCCGGTTTCTGGAAGAGTAACAGAAATCTCACTGGACAATAAGTCCCTCTCTGGTGACATTTTCCCATCCCTCTCGATTCTGCAGAGCCTGCAAGTTCTGTCACTCCCATCCAATTTAATTTCTGGAAAGCTTCCATCAGAAATAAGCAGGTGTACCAGCCTGAGAGTGTTGAATCTAACAGGAAATCAATTGGTTGGAGCAATCCCAGACTTGTCTGGGCTGAGAAGCCTGCAGGTTCTTGACCTTTCAGCAAACTACTTTTCTGGCAGCATCCCCAGCTCGGTGGGGAATCTAACTGGACTGGTTTCACTGGGTCTTGGGGAAAATGAATACAATGAGGGTGAGATTCCAGGGACTCTTGGAAATCTCAAGAACTTGGCCTGGCTCTATCTTGGTGGCTCCCACTTGATAGGAGACATTCCAGAATCACTATATGAAATGAAGGCATTGGAGACACTGGATATTTCGAGAAACAAGATCTCTGGCAGACTCTCCAGATCAATTTCCAAGTTAGAGAATCTTTACAAGATTGAGCTCTTCTCCAATAATTTGACAGGAGAGATACCAGCCGAGCTAGCAAACCTCACCAATCTGCAGGAGATTGACCTTTCTGCCAACAATATGTATGGTAGGTTGCCAGAGGAAATTGGTAACATGAAGAACTTGGTTGTTTTTCAACTATATGAAAACAACTTTTCTGGAGAACTTCCTGCTGGATTTGCAGATATGCGTCATCTCATTGGATTCTCAATTTATAGAAACAGCTTCACTGGGACGATTCCAGGAAATTTTGGCAGGTTTTCACCACTTGAAAGTATTGACATATCTGAGAATCAATTTTCAGGTGATTTCCCAAAGTTCTTGTGTGAAAACAGGAAGTTGAGGTTTTTGCTTGCATTGCAAAACAATTTCTCTGGGACTTTTCCGGAGTCTTATGTTACATGTAAATCTCTGAAGAGGTTTAGGATTAGTATGAACCGATTATCTGGGAAAATTCCAGACGAGGTTTGGGCAATTCCATATGTAGAAATAATTGATTTGGCCTATAATGATTTCACTGGTGAGGTACCTTCAGAAATCGGGTTGTCTACTAGCTTAAGTCATATAGTTTTGACAAAGAACAGGTTTTCAGGTAAGCTCCCATCAGAGCTTGGCAAGCTGGTGAACTTGGAGAAGCTTTACTTGAGCAACAATAATTTCTCTGGTGAAATACCACCTGAAATTGGATCTCTGAAGCAGTTATCTTCTTTGCATCTAGAAGAGAATTCTTTAACTGGATCAATACCTGCAGAACTGGGTCATTGTGCAATGCTGGTGGACTTGAATCTTGCTTGGAATTCTCTATCTGGAAATATCCCCCAGTCAGTTTCACTTATGAGCTCATTGAACTCTCTTAACATATCTGGGAACAAACTTTCAGGTTCTATTCCAGAAAATTTAGAAGCAATAAAGTTAAGCTCAGTGGATTTTTCTGAAAACCAGCTTTCTGGAAGAATCCCATCTGGTCTTTTTATTGTTGGAGGAGAGAAAGCTTTTCTTGGAAACAAGGGGCTGTGTGTTGAGGGAAACCTAAAACCTTCCATGAATTCTGATTTGAAGATTTGTGCCAAAAATCATGGTCAGCCAAGTGTCTCTGCTGATAAATTTGTCTTGTTCTTTTTCATTGCTTCTATTTTTGTTGTTATTTTGGCGGGGTTGGTGTTTTTGAGTTGTAGAAGCCTCAAGCATGACGCCGAGAAAAACTTGCAAGGTCAAAAGGAAGTCAGTCAAAAATGGAAACTTGCATCTTTCCATCAAGTAGATATTGATGCCGATGAAATATGTAAATTGGATGAAGATAATTTGATAGGTAGTGGTGGTACAGGAAAGGTTTATCGAGTGGAGTTGAGGAAAAATGGAGCCATGGTGGCTGTCAAGCAACTAGGGAAAGTAGATGGTGTGAAAATTTTAGCTGCAGAGATGGAGATTTTGGGGAAAATTAGGCATAGAAACATACTTAAACTCTATGCTTCTTTACTTAAAGGAGGATCCAACCTTTTAGTGTTTGAGTACATGCCAAATGGTAATCTTTTTCAAGCTCTTCACAGACAGATAAAAGATGGGAAGCCAAACTTGGATTGGAACCAGAGGTATAAAATTGCTCTGGGAGCTGGGAAAGGAATTGCCTATTTACACCATGACTGTAACCCACCAGTTATTCACAGGGATATAAAATCCAGCAACATTTTGCTTGATGAGGATTATGAGTCAAAAATTGCTGATTTTGGTATTGCAAGGTTTGCAGAAAAATCTGATAAGCAGTTGGGTTATAGCTGTCTAGCGGGCACACTTGGTTATATTGCTCCAGAACTTGCTTATGCCACTGACATCACGGAAAAGAGTGATGTTTATAGCTTTGGAGTGGTGCTATTAGAATTAGTGTCTGGCAGAGAACCCATTGAAGAGGAATATGGAGAGGCGAAGGATATTGTTTATTGGGTGTTGAGTAATCTCAATGACCGTGAAAGTATTCTCAACATTCTTGATGAAAGGGTGACATCCGAGTCTGTTGAAGATATGATCAAAGTGTTGAAGATTGCTATTAAGTGCACCACTAAGCTTCCATCGTTGCGCCCCACCATGAGAGAGGTTGTTAAGATGCTAATTGATGCCGAACCTTGCGCATTCAAATCTCCAAACAAAGACACAAAGGCCCTTCTCTAG 2913 0.4078 MAKSPRLFHFFQFLAMLLLTSYSIFPPCVSLTLETQALLQFKNHLKDSSNSLASWNESDSPCKFYGITCDPVSGRVTEISLDNKSLSGDIFPSLSILQSLQVLSLPSNLISGKLPSEISRCTSLRVLNLTGNQLVGAIPDLSGLRSLQVLDLSANYFSGSIPSSVGNLTGLVSLGLGENEYNEGEIPGTLGNLKNLAWLYLGGSHLIGDIPESLYEMKALETLDISRNKISGRLSRSISKLENLYKIELFSNNLTGEIPAELANLTNLQEIDLSANNMYGRLPEEIGNMKNLVVFQLYENNFSGELPAGFADMRHLIGFSIYRNSFTGTIPGNFGRFSPLESIDISENQFSGDFPKFLCENRKLRFLLALQNNFSGTFPESYVTCKSLKRFRISMNRLSGKIPDEVWAIPYVEIIDLAYNDFTGEVPSEIGLSTSLSHIVLTKNRFSGKLPSELGKLVNLEKLYLSNNNFSGEIPPEIGSLKQLSSLHLEENSLTGSIPAELGHCAMLVDLNLAWNSLSGNIPQSVSLMSSLNSLNISGNKLSGSIPENLEAIKLSSVDFSENQLSGRIPSGLFIVGGEKAFLGNKGLCVEGNLKPSMNSDLKICAKNHGQPSVSADKFVLFFFIASIFVVILAGLVFLSCRSLKHDAEKNLQGQKEVSQKWKLASFHQVDIDADEICKLDEDNLIGSGGTGKVYRVELRKNGAMVAVKQLGKVDGVKILAAEMEILGKIRHRNILKLYASLLKGGSNLLVFEYMPNGNLFQALHRQIKDGKPNLDWNQRYKIALGAGKGIAYLHHDCNPPVIHRDIKSSNILLDEDYESKIADFGIARFAEKSDKQLGYSCLAGTLGYIAPELAYATDITEKSDVYSFGVVLLELVSGREPIEEEYGEAKDIVYWVLSNLNDRESILNILDERVTSESVEDMIKVLKIAIKCTTKLPSLRPTMREVVKMLIDAEPCAFKSPNKDTKALL* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0021 970 Pfam Protein kinase domain 682 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0021 970 Pfam Leucine rich repeat 195 254 IPR001611 GO:0005515
Gso12g0021 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Gso12g0021 970 SUPERFAMILY L domain-like 58 396 - -
Gso12g0021 970 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Gso12g0021 970 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Gso12g0021 970 Gene3D Ribonuclease Inhibitor 33 141 IPR032675 -
Gso12g0021 970 CDD STKc_IRAK 686 951 - -
Gso12g0021 970 Gene3D Transferase(Phosphotransferase) domain 1 755 965 - -
Gso12g0021 970 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 11 962 - -
Gso12g0021 970 SUPERFAMILY RNI-like 314 574 - -
Gso12g0021 970 Gene3D Ribonuclease Inhibitor 142 233 IPR032675 -
Gso12g0021 970 Gene3D Ribonuclease Inhibitor 234 316 IPR032675 -
Gso12g0021 970 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Gso12g0021 970 SMART LRR_sd22_2 97 120 - -
Gso12g0021 970 SMART LRR_sd22_2 529 552 - -
Gso12g0021 970 SMART LRR_sd22_2 217 246 - -
Gso12g0021 970 SMART LRR_sd22_2 457 489 - -
Gso12g0021 970 SMART LRR_sd22_2 265 288 - -
Gso12g0021 970 SMART LRR_typ_2 265 289 IPR003591 -
Gso12g0021 970 SMART LRR_typ_2 97 121 IPR003591 -
Gso12g0021 970 SMART LRR_typ_2 217 241 IPR003591 -
Gso12g0021 970 SMART LRR_typ_2 144 168 IPR003591 -
Gso12g0021 970 SMART LRR_typ_2 529 553 IPR003591 -
Gso12g0021 970 SMART LRR_typ_2 481 505 IPR003591 -
Gso12g0021 970 SMART LRR_typ_2 457 480 IPR003591 -
Gso12g0021 970 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515
Gso12g0021 970 Gene3D Phosphorylase Kinase; domain 1 663 754 - -
Gso12g0021 970 ProSiteProfiles Protein kinase domain profile. 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0021 970 ProSiteProfiles Leucine-rich repeat profile. 459 481 IPR001611 GO:0005515
Gso12g0021 970 Pfam Leucine Rich repeat 121 134 IPR001611 GO:0005515
Gso12g0021 970 SUPERFAMILY Protein kinase-like (PK-like) 678 951 IPR011009 -
Gso12g0021 970 SMART serkin_6 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0021 970 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 962 - -
Gso12g0021 970 Gene3D Ribonuclease Inhibitor 317 599 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0021 Gso-Chr12 201393 206461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0021 24 967 Receptor kinase-like Gene Family AT1G72180 57.652 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso12g0021 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0021 - - gmx:100789704 1845.86