Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0020 ATGGCACCTTTTCTCATTAATCACCTCTTTGTTTTCCTTTTTTGTCTTCGAGCCATAAACACACTTTCCACCACTGTTTCCATCTCTGAAACTTCCAATTCCAACCAAACACTTATCTGTGTCCTGCAACACCCAAACCAACAAGGACAATCAAATCTCAACTGTACCAGCTTCCCTCAGGCTCAGGCTATTACACTTGATGTCAATCCCAATGTTTCTTACTCTCAGATTGTGGGCGGCAACGGGTTCGTGTGTGCTTTAGGACCTTTGTCTTCTTCCATCTCCGTCATGGGCTGTTGGAGATTCTCTGCCAATGCTACATACAATGTTCCGTACAAACGCATCTACCGTGGACCCCTCGTGGAAGATATCGACAGTGGCAACTCTCACGTTTGCGGTCTTGTAAGAAAAGGAAATAAGAACAATAGCCTTGAGCTGGAGTGTTGGCAATGGCATGGGTTCAATTCAAGCATGTCCATGCCCATGTCAAGCGTTGCAGTTGGAGAGAATTTCGTGTGTGGCTTATCAGAGAGAGGGGACGTTAATTGCAGGGAAAGAGGAAGGGGTAATGGGAGTAGGGTAAGAGTTGTGGTTGATGCCCCTGCGCCCGGTGGGAATTACAGTTATATCGCAGCTGGGTTTAGGCATGCCTGTGTCATATCTGGTGATGGTAGCTTGCATTGTTGGGGAGACATGGAGGAGGGTCAGAAACCACCGCAAGCTGGGAGCTTCATTTCTCTGGCGTTGGGAGAGAAGCGAAGCTGTGCACTTGGGGACGACAGAAGAGTTGTGTGTTGGGGGTCCAATAATTTCAGCATGCCACGCAGATTGCAAGACACTTACTTCGAATCAATTGTGGCAAAGCGAACCGTTTTCTGCGGAGTCTTGTCTTCTGACTATTCCTTGCTCTGTTGGGGTTCCAAAATATTTGAGTCAAACAACAAGGTGTTTGACGACGTCCTCCCAGGACCTTGTCGGAACGAGTGCCCGTGTGGGCCCCAGTCAAATTCAGCCAAACTATGTAACTCTCCTGGAGGAGTCATTTGTCAACCCTGTTCACCCAGAGTGGTTCAATCTCCCTCGCCTCCATCGAACCAAAGTGGTGGTTGGAGCAGCCAAATGGTGGCGTTTCTGGTGGTTGGTTGTGTGGGATGCAGTTCTCTATTGCTAGTCACGGCCTTCTTCCTTAACAGGTACTGCAACTCCAAACGCAGAGGAAGCCGCGTCCATGACTCTGGCCGCTTGGATGACGATCCGCAGGCACAGGATGGATCTCGTGTTCTTCAGAAGCGCTTGAGCCACGCCATAAGCATGGGAAATGGGAGCCCTTTGGAGGAGTTCTCCCTGGAGACACTGCTTCAAGTCACCAACAATTTCTGTGAGGACAAGAGAATTGGGCTTGGTAGCTTCGGTGCAGTGTACCATGCCACCCTGGAGGACGGCAAGGAGGTTGCTATAAAAAGAGCCGAAGCCTCATCCTCAACCTACACAGTTTTGGGTGGGCAAGGGCAAGTGGACAAAGACAATGCCTTTGTGAACGAGCTGGAATCACTCTCAAGACTCCACCACAAGAACCTGGTCCGGTTGTTGGGGTTCTATGAAGACAGCAAAGAACGCATTTTGGTGTACGATTACATGGACAATGGGAGCCTGAGTGATCATCTCCACAAGCTCCAAAGTTCAGCTCTCATGTCATGGGCAGTGAGAATCAAGGTGGCTCTAGATGCTGCAAGGGGCATAGAGTACTTGCACCAATACGCCACTCCACCAATCATTCACCGTGACATTAAGTCTGCCAACATATTATTGGATGCCAAGTGGACAGCAAAAGTGTCTGATTTTGGACTCTCTCTCATGGGCCCTGACCCTGAAGATGAGGATGCCCACCTTTCACTTCTGGCCGCTGGCACTGTTGGCTACATGGACCCTGAATACTATAGGCTTCAACATTTGACCCCCAAGAGTGACGTCTACAGCTTTGGGGTGGTTTTGCTTGAGTTGCTCTCCGGCTACAAGGCCATCCATAAAAACGAGAATGGGGTGCCACGAAATGTTGTTGATTTTGTGGTGCCATTCATTTTCCAAGATGAGATTCACAGAGTGTTGGACAGAAGAGTGGCCCCACCCACGCCCTTTGAGATAGAGGCAGTGGCCTACGTCGGTTATTTGGCTGCTGATTGTGTTAGGCTTGAAGGTCGAGATAGACCAACTATGTCTCAAGTTGTAAATAACTTGGAAAGAGCATTGGCTGCATGTTTAGCCAAACCAATACTCTCTAGGTCCACCACCGATTCTATTTCTTCACAATAG 2310 0.4909 MAPFLINHLFVFLFCLRAINTLSTTVSISETSNSNQTLICVLQHPNQQGQSNLNCTSFPQAQAITLDVNPNVSYSQIVGGNGFVCALGPLSSSISVMGCWRFSANATYNVPYKRIYRGPLVEDIDSGNSHVCGLVRKGNKNNSLELECWQWHGFNSSMSMPMSSVAVGENFVCGLSERGDVNCRERGRGNGSRVRVVVDAPAPGGNYSYIAAGFRHACVISGDGSLHCWGDMEEGQKPPQAGSFISLALGEKRSCALGDDRRVVCWGSNNFSMPRRLQDTYFESIVAKRTVFCGVLSSDYSLLCWGSKIFESNNKVFDDVLPGPCRNECPCGPQSNSAKLCNSPGGVICQPCSPRVVQSPSPPSNQSGGWSSQMVAFLVVGCVGCSSLLLVTAFFLNRYCNSKRRGSRVHDSGRLDDDPQAQDGSRVLQKRLSHAISMGNGSPLEEFSLETLLQVTNNFCEDKRIGLGSFGAVYHATLEDGKEVAIKRAEASSSTYTVLGGQGQVDKDNAFVNELESLSRLHHKNLVRLLGFYEDSKERILVYDYMDNGSLSDHLHKLQSSALMSWAVRIKVALDAARGIEYLHQYATPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPDPEDEDAHLSLLAAGTVGYMDPEYYRLQHLTPKSDVYSFGVVLLELLSGYKAIHKNENGVPRNVVDFVVPFIFQDEIHRVLDRRVAPPTPFEIEAVAYVGYLAADCVRLEGRDRPTMSQVVNNLERALAACLAKPILSRSTTDSISSQ* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0020 769 ProSitePatterns Protein kinases ATP-binding region signature. 465 487 IPR017441 GO:0005524
Gso12g0020 769 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 23 754 IPR044815 GO:0004674
Gso12g0020 769 PANTHER OJ000114_01.11 PROTEIN 23 754 - -
Gso12g0020 769 Pfam Protein kinase domain 461 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0020 769 Pfam Regulator of chromosome condensation (RCC1) repeat 210 236 - -
Gso12g0020 769 CDD STKc_IRAK 465 747 - -
Gso12g0020 769 Gene3D Phosphorylase Kinase; domain 1 421 545 - -
Gso12g0020 769 ProSiteProfiles Protein kinase domain profile. 459 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0020 769 MobiDBLite consensus disorder prediction 405 424 - -
Gso12g0020 769 Gene3D Transferase(Phosphotransferase) domain 1 546 755 - -
Gso12g0020 769 SUPERFAMILY Protein kinase-like (PK-like) 437 745 IPR011009 -
Gso12g0020 769 SMART serkin_6 459 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0020 769 SUPERFAMILY RCC1/BLIP-II 65 308 IPR009091 -
Gso12g0020 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Gso12g0020 769 Gene3D - 155 339 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0020 Gso-Chr12 198029 200965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0020 24 763 Receptor kinase-like Gene Family AT5G47850 49.472 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso12g0020 Pkinase 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0020 - - gmx:100305418 1518.06