Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0019 ATGGCCCAGCAGTCATCTAGGCTTCAGCGTTTGCTCACTCTCCTAGACACTGGGTCAAACCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATTTACGCAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGGTCGATTGCTGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTTGCTTGTGTTGTATCAAAAATGTCTGAGAATGGGATATCTTGTAGCATTGAGGATCTGTGTGCATGGCCTTATTTACAATCAAAAGTTACAGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCCTTATTAGCATCAGGAGGACAGGAATATGATATTGGAAATGATAATATAAAGAACCCAAAGGAGCGACTGGTTCGTCAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCATCCAAATCAGACTCACATCTGAATGGGATAGATCGTAGACTTTTTACATCTTGTTCTTCACATAACATCCAGAAAATGGTTTCAAACATGGTTCCTAGTGTCAAATCTAAGTGGCCAAGTGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCTAAGGACCAAACAAAAAGCTGGTGTGAAGATGGAAGTACAGAGGTATCAGGTGGTCAAAATTTGACTTCGAAAGGCACATGTCCCGATTCAGTAAATTATAGTAAGGCATTCATGAGTGTTAATCACGATGAAGATGGCATTGAGCATGATGGGGATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGACATGGCAGCGTGATGGCATTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGAGTATTTAAACCCGACTCAAGCATGGGTGGGACCTTGTTTATTGAATTAGAAGACAAAAGTATACCAAATATATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCCGCAGATGAGTTTGTTTCAAACTTGAAGAGGCCAAAACTTGAAGATGTATCATCATCAACCTCTATGGATAGTGTGATGACTTGTAACAATGAAGGTGATATTGAAATCAGCATTAGTTCTGAAACCCATGGATTCAATTTAACTTTGGATTATGGGAATGGGCAATTTAATGGTAATTCTGTTGACATGGATTACTCTGACGGCTTACGCGATGCATGTAAGGAGCCTGCTAATATAGAGGAACAGAAGGGTTATTCTGATGATAATAAGATTCCCTCTGGAAATATTAGTGTGCTGAGAAATCTTCCTCAGAATTGTGAGCTGATGAACTCGGTTAAAGTGGCTAGAGGTTCCTGGCTTCGAAACTGTGAATTTCTTCAAGATTGTGTTATACGTTTTTTGTGCGTGTTGTCACTTGATCGCTTTGGAGATTATGTATCAGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCTGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGACATGGCAGTCTTCTTGGTATCAAATATTTGGTTGCCGTACGGCAGGAGATGCTTTCTGATTTGCTTGGACGTGTTCTTCCTGCTTGTAAATCTGGGTTGGAGGACCCTGATGACGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCATCTGCAATTGTTTCCTTGCAGGGTCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACCAGCAGTGTAATGAATCTGCTGGCAGAAATATATTCTCAAGAAGATATGGCCCCAAAGATGTATACAGTTTTTAAATTGGCAGACAACCAAATGGAAAATGGAGTAGATGGTTGTTATGATGTTGATGGGGAAGAAAATCCTTATGTGCTTTCAACATTGGCACCACGTTTGTGGCCCTTTATGAGGCACACTATCACATCTGTTCGTTATTCTGCGATACGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAGAGAAGCATGTCTGAGTTGTCTAGTGCTTCATTCTGGCCCTCTTTTATATTTGGAGATACCCTTAGAATTGTCTTCCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTCGAGGACTTGGAGATAGCTGCGAGGTCTTATGTGGCTTCTTGGATAGAACTTGCTTCTACACCATTTGGCTCAGCATTAGATGCCTCAAAGATGTATTGGCCTGTTGCCTTTCCACGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATGTGGTGTGGATTTTAGTCTTGATTCTATAAAAGGAACTATTCCACCAGATAGAAATGGAGATGTTTCTATGAATTCTGTTAAGATAGTTGTTGGTGCTGAGGTAGACACATCTGTAACTCATACCCGGGTAGTTACATCAACTACTTTGGGAATTTTTGCTTCTAAGCTGCCAGAGGGTTCTTTAAAATATGTGATTGATCCACTTTGGAGCTCTCTAACATCGTTGTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTGTTTCTTGGTTCAAGGAGATTAAGAACAGAAATTCGTCCAAAAACCTTGATGGTATCCCTGGTGCCCTCAAAGATTGGTTGCTAGACTTATTAGCATGTTCTGACCCAGCATTCCCAACAAAAGATTCAATTCTTCCCTATGCTGAGCTTTCCAGAACTTATGGGAAGATGCGCAATGAGGCTGGTCAATTACTAAATGTGGTCAAGTCTTCTGGTATGTTTAATGAATTACTGACAGCTACCCAAATTGAGTTGGATCGCTTGAGTGTGGATGATGCCATTGGTTTTGCGTCAAAAATTCCTGCTTTGTGTAATGATAGTTCTGCAAATGAATCCTTGGGAAAGAACATCACGGATGATATTGAATCCTCGAAACAGAGACTCTTGACTACTTCTGGATATTTAAAATGCGTACAGAGTAATTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGACTTACCCCAATCATTTTGCCTTTGATGGCTTCAATCAAACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTTGCGCGAAGACCTTGCCCCAATGATAAATTAATTAAGAATATATGTAGTTTAACTTGCATGGATCCGTCTGAGACCCCTCAAGCCAAATCCCTTTGTACCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTCGAACTCCTGTGAGCAAACAGAAGTCAAAGGTCCATGTGCTGGCCGGTGAAGATCGGTCAAAGGTGGAGGGATTTTTAAGTAGACGGGGATCTGAGCTAGCATTGAGGCTTCTATGTGAGAAGTTTGGTGCGTCATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTGCTTAAGCCCAGCTCCTCTGAATCTCTACTTGTCACTAATGAAAAGCCAGTTACTATGTCTATTGAGTCTGTTAACGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGTTCTGTTGCTCCCGTCTTAAATGAAGAGTTGAAGCCAAAACTGTTGACACTTCTTCCATGTATTTTTAAATGTGTTCAGCATTCTCATGTTGCAGTTAGATTAGCTGCTTCGCGCTGCATCACTTCCATGGCACAGTCAATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCATCATCAGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGGCTGGGTGTAGAGTTGGTACCTTATGCTCCTCTATTGGTGGTTCCGCTTCTAAGGTGCATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTGGCTCGAGGCCTTCCTCAACCAATTGGATTAGGGGAAGGTGTATCTAGAAATGCAGAAGATTTGCAGTTTTTGGAGCAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAACTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGCGATGACATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGAACTTCAATTGGGAATGAGGATCTTCTGCCATCTTTAATTATTTGCCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATCTCTAGTCTTCAATATGTTGGTTCTGCTCAGGAGCGAATGCTTCTTCGGGATCATTTTTGCAAGCATAATGTCATCATAACGTCATATGACGTTGTCCGTAAAGATATTGATTTTCTAGGACAGCTGTTGTGGAATCACTGCATCTTAGATGAAGGGCATATAATCAAGAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGTACACCTATACAGAATAACATCATGGATTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACTGAGAGACAGTTCCAAGCCACATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGTTCTGCTAGGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGGACAAAGGATGAAGTCTTGTCTGATCTGCCCGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATTTAAACTTTATGAACAATTTTCTGGTTCTCGTGCTAAACAAGAAATGTCATCTGTTGTAACAACGAATGAGTCTGCTGCAGCAGAAGGAAGTAGCAATTCTACTAAAGCATCTTCACATGTATTCCAGGCGCTCCAATACTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTTTCTACTATCCTCTCAGAACTGTTTCCTGCTGGCTCTGATGTTATTTCAGAACTTCACAAACTCTATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAATGTGGAATTGGAGTTGACAATTCTGGTTCTGAGGGTGCGGTTAACGTTGGGCAGCATAGGGTCTTGATATTCGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCACACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTCTTGCTGCTTACAACACATGTCGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCGATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTTGTTAATGTCCATCGGCTAATAATGCGTGGTACTCTGGAAGAGAAAGTTATGAGTCTACAAAGGTTCAAAGTGTCAGTGGCTAATGCTGTCATTAATTCTGAAAATGCTAGCATGAAAACAATGAATACAGATCAGTTGCTTGATTTGTTTGCGTCAGCAGAAACCTCCAAGAAGGGCGCATCTGTTGTGAAGAGTCCAGAGAACAACTCTGATGGAGACGCTAAATTAGTAGGCAGTGGGAAGGGATTGAAATCAATACTGGGGGGATTGGAGGAGCTATGGGACCAATCACAGTATACAGAGGAGTACAATCTGAGTCTCTTTTTAGCAAGGCTTAATGGCTAA 6144 0.4116 MAQQSSRLQRLLTLLDTGSNQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFACVVSKMSENGISCSIEDLCAWPYLQSKVTGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMASKSDSHLNGIDRRLFTSCSSHNIQKMVSNMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGSTEVSGGQNLTSKGTCPDSVNYSKAFMSVNHDEDGIEHDGDGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVFKPDSSMGGTLFIELEDKSIPNILKREREIDLNMQVSADEFVSNLKRPKLEDVSSSTSMDSVMTCNNEGDIEISISSETHGFNLTLDYGNGQFNGNSVDMDYSDGLRDACKEPANIEEQKGYSDDNKIPSGNISVLRNLPQNCELMNSVKVARGSWLRNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMAPKMYTVFKLADNQMENGVDGCYDVDGEENPYVLSTLAPRLWPFMRHTITSVRYSAIRTLERLLEAGYKRSMSELSSASFWPSFIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSVEDLEIAARSYVASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENECGVDFSLDSIKGTIPPDRNGDVSMNSVKIVVGAEVDTSVTHTRVVTSTTLGIFASKLPEGSLKYVIDPLWSSLTSLSGVQRQVASMVLVSWFKEIKNRNSSKNLDGIPGALKDWLLDLLACSDPAFPTKDSILPYAELSRTYGKMRNEAGQLLNVVKSSGMFNELLTATQIELDRLSVDDAIGFASKIPALCNDSSANESLGKNITDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQMKSAEALAELMYHCVARRPCPNDKLIKNICSLTCMDPSETPQAKSLCTMESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELALRLLCEKFGASLFDKLPKLWDCLTEVLKPSSSESLLVTNEKPVTMSIESVNDPQTLINNIQVVRSVAPVLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSMAQSMTVKVMGAVVENAIPMLEDASSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTSIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMLLRDHFCKHNVIITSYDVVRKDIDFLGQLLWNHCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSARDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQFKLYEQFSGSRAKQEMSSVVTTNESAAAEGSSNSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLSTILSELFPAGSDVISELHKLYHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFHTHMKSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENASMKTMNTDQLLDLFASAETSKKGASVVKSPENNSDGDAKLVGSGKGLKSILGGLEELWDQSQYTEEYNLSLFLARLNG* 2048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0019 2047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1463 1633 IPR014001 -
Gso12g0019 2047 SMART ultradead3 1447 1644 IPR014001 -
Gso12g0019 2047 CDD SF2_C_SNF 1798 1940 - -
Gso12g0019 2047 Pfam SNF2-related domain 1469 1765 IPR000330 GO:0005524|GO:0140658
Gso12g0019 2047 SMART helicmild6 1843 1929 IPR001650 -
Gso12g0019 2047 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1819 1975 IPR001650 -
Gso12g0019 2047 CDD DEXHc_Mot1 1451 1683 IPR044078 GO:0005524
Gso12g0019 2047 Gene3D - 4 89 IPR011989 -
Gso12g0019 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1684 1985 IPR027417 -
Gso12g0019 2047 Gene3D - 1693 2007 IPR027417 -
Gso12g0019 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1434 1683 IPR027417 -
Gso12g0019 2047 SUPERFAMILY ARM repeat 6 1490 IPR016024 -
Gso12g0019 2047 Gene3D - 1195 1409 IPR011989 -
Gso12g0019 2047 Gene3D - 1423 1682 IPR038718 -
Gso12g0019 2047 Pfam Helicase conserved C-terminal domain 1827 1929 IPR001650 -
Gso12g0019 2047 Gene3D - 499 685 IPR011989 -
Gso12g0019 2047 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1979 IPR044972 GO:0003677|GO:0016887|GO:0017025
Gso12g0019 2047 Pfam Domain of unknown function (DUF3535) 780 1234 IPR022707 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0019 Gso-Chr12 173552 196279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0019 1446 1984 RAD5 or RAD16-like Gene Family AT1G02670 26.202 2.59e-42 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso12g0019 DUF3535 6.7e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0019 K15192 - gmx:100777977 3890.5