Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0010 ATGAGTATGCAGCAGCTTCCGTGTGACAGCGAAGGCGCGTGTATGGTGTGCAAGGGCTTGCCGGGGCAAGAAGAGAGACTGTTATGCGTCACGTGTGACACCCCTTGGCACGTGCCCTGCCTGTTCGCCCCTCCACCCACTCTGTCCGCCACCGCACGATGGCTATGCCCTGATTGTTCCATTCTGGACTCTGACGTTCCACCAGTCCCCGCTCCCGCCCGCAACCAACTGGTGGCTGCAATGCTGGCCGTTGAAAATGACGCTTCTCTCACCCAACACGACAAGGCCCGAAAACGTCAAGAGCTTTTGACTGGAAAGGCTCCCGCAGACGACGACGACGACGACGAACAAGAGAATAAAGCATCCTTATCGGATATTCTCTCCAGATCTCTCAACTGCTCCATCTGTATCCAGTTACCGGAGAGACCCGTCACGAGTCCGTGTGGGCACAGTTTCTGTTTGAAGTGCTTTGAGAAATGGGTTCGGCAAGGGAAGAGGAATTGTGCCAAATGCCGGCAGATTATTCCGGCCAAGATGACAAGCCAGCCCCGTATCAATTCTGCACTGGTGTTTGCAATACGAATGGCGAGGCAGGCTTCAAACAGTAGTGGTAGTGGCCGAGGAGGAGTGAGGAGTGTTAACCATTTCCTTCACAATCAAGATAGACCTGATGAGCCATTCACCACTGAACGCGCACAGAGGAGTGGTCGTGCCAATGCGGCTAGCGGTAAAATATTCGTGACAGTGCCTACGGATCATTTTGGTCCAATCACGGCAGAGAATGACCCTCTGCGGAATCAAGGTCTGCTGGTAGGTGAAAGCTGGAGAGACAGACTCGAATGCAGGCAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCTGGACAATCAGACCGCGGTGCACAATCTGTTGTTCTTTCTGGTGGTTATGTTGATGACGAGGACCATGGAGAATGGTTTCTCTACACCGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACAAACAAGAGTCACTCTTTTGACCAGAAGTTTGAGAAATACAACCGTGCACTTCAAGTTAGCTGTCTCCAGGGTTATCCCGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCCTCATATGCCCCTGAGACTGGCGTGCGGTACGATGGAATTTATAGAATTGAAAAGTGCTGGCAGATAGCAGGGTTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTCAGGTGTGACAATGAACCTGCCCCTTGGACAAGTGATGATCATGGAGATAGGCCCAGACCCTTGCCGGTCATTCGTGAGCTGAAAAAGGCTACAGTCATACATGAAAGGACCGAATCTCCATCTTGGGATTTTGATGAGGAGGATTCTCGTTGGAAATGGAAGAAACCACCGCCTCCCAGCAGACAAAAGGTACAAAATGTTGAACCCGTAGAGGTAGCAAGGGCAAAGTCAAATAAAGAAGTAAAGAAATTCCAACTTAAGTCAATCAAGGAACAATTGCAGAGAGGGTTCTCGTGCATGATATGCAAGGAGGTTATGGTTTCACCAGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTGAATTTGCTGGTCAGGCTTTTGTGAAGGAGAGAAGTAAGGGTGGGAGAACACTTCGGTCCCAAAAAAATGTGATGAAATGTCCTTCTTGTTCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGACATAGATTTGAAGAGTGCAATTGAGTCATTGAAAGCCAAGGTCGAAGAAATTGGAGAATCGGTGGAGTCAAGTGAAGATGCAGATGGATTACAGGATGATGGTGCTGGCAAGGATGAAGATACTGACTCCAGAAACAAAAATTCTGTGCAGGAGTTGAATGGTCTACCTGAAGGATCTGATGTTGGTGAACTTGAAGATACCACCAATAAGGAGCCAGATCCAGCAATGAAGTGCAATGGAAAGAGAAAGAAAGGTGATTATGGAAATCAATCGCCTGATGATAAAATGGAAAAAAGAGGTAAAAATTACAAAACAACAGAGGAAGAATTGCATGAAGAAAATGATTCTTCATCAAGTCCTCTCCATCCTCAATGA 2115 0.4809 MSMQQLPCDSEGACMVCKGLPGQEERLLCVTCDTPWHVPCLFAPPPTLSATARWLCPDCSILDSDVPPVPAPARNQLVAAMLAVENDASLTQHDKARKRQELLTGKAPADDDDDDEQENKASLSDILSRSLNCSICIQLPERPVTSPCGHSFCLKCFEKWVRQGKRNCAKCRQIIPAKMTSQPRINSALVFAIRMARQASNSSGSGRGGVRSVNHFLHNQDRPDEPFTTERAQRSGRANAASGKIFVTVPTDHFGPITAENDPLRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNRALQVSCLQGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVIRELKKATVIHERTESPSWDFDEEDSRWKWKKPPPPSRQKVQNVEPVEVARAKSNKEVKKFQLKSIKEQLQRGFSCMICKEVMVSPVTTPCAHNFCKSCLEGEFAGQAFVKERSKGGRTLRSQKNVMKCPSCSIDISDYLQNIQVDIDLKSAIESLKAKVEEIGESVESSEDADGLQDDGAGKDEDTDSRNKNSVQELNGLPEGSDVGELEDTTNKEPDPAMKCNGKRKKGDYGNQSPDDKMEKRGKNYKTTEEELHEENDSSSSPLHPQ* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0010 704 SUPERFAMILY PUA domain-like 238 436 IPR015947 -
Gso12g0010 704 SMART PHD_3 13 60 IPR001965 -
Gso12g0010 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Gso12g0010 704 SUPERFAMILY FYVE/PHD zinc finger 5 67 IPR011011 -
Gso12g0010 704 ProSiteProfiles Zinc finger RING-type profile. 133 172 IPR001841 -
Gso12g0010 704 CDD RING-CH-C4HC3_NSE1 14 62 IPR014857 -
Gso12g0010 704 Pfam Zinc finger, C3HC4 type (RING finger) 133 171 IPR018957 GO:0046872
Gso12g0010 704 SMART G9a_1 259 416 IPR003105 -
Gso12g0010 704 ProSiteProfiles YDG domain profile. 264 412 IPR003105 -
Gso12g0010 704 MobiDBLite consensus disorder prediction 610 626 - -
Gso12g0010 704 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 677 IPR045134 -
Gso12g0010 704 MobiDBLite consensus disorder prediction 200 228 - -
Gso12g0010 704 CDD RING-HC 133 171 - -
Gso12g0010 704 ProSitePatterns Zinc finger RING-type signature. 525 534 IPR017907 -
Gso12g0010 704 SUPERFAMILY RING/U-box 502 591 - -
Gso12g0010 704 Pfam RING-type zinc-finger 510 564 IPR027370 -
Gso12g0010 704 Pfam SAD/SRA domain 267 415 IPR003105 -
Gso12g0010 704 MobiDBLite consensus disorder prediction 643 696 - -
Gso12g0010 704 Gene3D - 235 433 IPR036987 -
Gso12g0010 704 MobiDBLite consensus disorder prediction 598 704 - -
Gso12g0010 704 ProSitePatterns Zinc finger PHD-type signature. 14 59 IPR019786 -
Gso12g0010 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 198 IPR013083 -
Gso12g0010 704 SMART ring_2 510 566 IPR001841 -
Gso12g0010 704 SMART ring_2 133 171 IPR001841 -
Gso12g0010 704 SMART ring_2 14 59 IPR001841 -
Gso12g0010 704 SUPERFAMILY RING/U-box 127 189 - -
Gso12g0010 704 ProSiteProfiles Zinc finger RING-type profile. 510 567 IPR001841 -
Gso12g0010 704 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 3 677 - -
Gso12g0010 704 MobiDBLite consensus disorder prediction 102 121 - -
Gso12g0010 704 Coils Coil 587 607 - -
Gso12g0010 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 609 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0010 Gso-Chr12 106707 110604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0010 5 601 C2H2 Transcription Factor Family AT5G39550 57.851 0.0 696