Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0007 ATGGTGGAAGAGACACAAATGAAAGGTATTGTGGTATTACCGCTCTGTTCTCCCATGGCAGCTCCTCTGCAGGTTGTATTATACGGAAATCAGCCTCACCCAGAAGCCAAGTTTTTGTTTTTGAGGAGTACTGGTCGTTGCACTAATTTTCAGGTTCACTCCTCTCGCAGAGCACCCCCTGGTGTTGACACCAGAATCCATTGGGAAAACGAAGATGAAGGTTGGATCGGAGGTACCAATACCAAACACCAACAAACCCACAAACCCAATAACATGTTACAGGCTGATGACTTTCCAGATCTCCTCTCTGCTTCTTTAGGTTCTCATTACGAATTCTTAGGCGTATCACCAGATGCGGATTTAGAAGAAATTAAAGTTGCTTATCGGAAACTGTCAAAGGAGTATCATCCCGACACAACTTCCCTCCCTCTCAAAACTGCCTCAGAAAAGTTCATGAAATTAAGAGAGGTTTACAACGTTCTTAGCAATGAAGAGAGTCGGAAATTCTATGACTGGACCCTTGCTCAAGAGGTTGCAAGCCGCCACGCAGAGAAGATGAAAATGAAATTAGAGGATCCTCGCGAGCAACAACTCAAGAACTGGGAACCTGTTCCAGACATGGTTGACCGCCTTGGTGGAAGGAATATGAAGCTTAGTGATCAGGCAGTTTCTGCCATCACTATTGATCTTTTCATCATTGTTTTTGCCATATGTTGTATCATATATGTAATTTTCTTTAAAGAACCCTATTACTACTAA 759 0.4295 MVEETQMKGIVVLPLCSPMAAPLQVVLYGNQPHPEAKFLFLRSTGRCTNFQVHSSRRAPPGVDTRIHWENEDEGWIGGTNTKHQQTHKPNNMLQADDFPDLLSASLGSHYEFLGVSPDADLEEIKVAYRKLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEESRKFYDWTLAQEVASRHAEKMKMKLEDPREQQLKNWEPVPDMVDRLGGRNMKLSDQAVSAITIDLFIIVFAICCIIYVIFFKEPYYY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0007 252 PRINTS DnaJ domain signature 110 128 IPR001623 -
Gso12g0007 252 PRINTS DnaJ domain signature 128 143 IPR001623 -
Gso12g0007 252 PRINTS DnaJ domain signature 146 166 IPR001623 -
Gso12g0007 252 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 52 250 IPR044618 -
Gso12g0007 252 Pfam DnaJ domain 109 171 IPR001623 -
Gso12g0007 252 Gene3D DnaJ domain 102 194 IPR036869 -
Gso12g0007 252 SMART dnaj_3 107 166 IPR001623 -
Gso12g0007 252 ProSiteProfiles dnaJ domain profile. 108 174 IPR001623 -
Gso12g0007 252 SUPERFAMILY Chaperone J-domain 78 170 IPR036869 -
Gso12g0007 252 CDD DnaJ 109 163 IPR001623 -
Gso12g0007 252 ProSitePatterns Nt-dnaJ domain signature. 151 170 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0007 Gso-Chr12 77966 79014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0007 109 176 C2H2 Transcription Factor Family AT1G74250 36.111 3.78e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0007 K23051 - gmx:100819309 520.39