Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3787 ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCAACCAACCGGAGAATCCTCCTTTTCCTGTGAAATTATCCCTATTCCTCCTGCTGCAGCTACTTTTAACGATGATGATTTACAAAACGTCCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACACAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGTTTCGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGGTATATACCCATGGCTTCCCCGCAAAAAATTTCATGGGCAATTTCTAGCCATTGTTTTGGTTGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGCCAAAGAATCAATGAGCGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAA 822 0.4161 MQLASNGDKEECSESEPILNHHHLHLQPTGESSFSCEIIPIPPAAATFNDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAGIYPWLPRKKFHGQFLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3787 273 SMART ringv_2 71 120 IPR011016 GO:0008270
Gso11g3787 273 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Gso11g3787 273 SUPERFAMILY RING/U-box 67 123 - -
Gso11g3787 273 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Gso11g3787 273 CDD RING_CH-C4HC3_MARCH 72 120 - -
Gso11g3787 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 124 IPR013083 -
Gso11g3787 273 PANTHER OS02G0132300 PROTEIN 2 272 - -
Gso11g3787 273 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3787 Gso-Chr11 53461357 53466544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3787 31 192 C3H Transcription Factor Family AT1G50440 73.333 2.38e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3787 - - gmx:100808123 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0011 15 119986 125089 Gso11g3787 11 53461357 53466544 GST