Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3785 ATGAGTAGCAACGTTAACATGGCCTCCACCTCGCGTGGTTCCACCTCCTCCTCCAATGGCCTTCTCACCGTCACCATTGCCGGCAGCAGCAGCAGCCACTCTGACGACCCCACCACCAACGACAGCGACAACGATGAAGACGAATTGCTCGTTGATCCTAACGATCCTTTCGATATTACGCATACCAAAAATGCACCGCCCGAGTCCCTCAAGCGTTGGCGACAAGCAGCTTTCGTCCTCAATGCGTCCAGGCGTTTTAGATACACTCTTGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATTAGATCCCACGCACAAGTCATCAGAGCAGCTTTGCTTTTCAGATTGGCTGGTGAACGGGAACTAGTGACAAGTTCAGCAGCAGTGGCATCCCCATCTCCAGTTGGTGAGTATGCAGTTGGGCTCGAACAACTTGTTTCAATGACTAAGAATCAGAATATTTCTGCTTTACAACAATATGGAGGGGTTAAAGGCTTATCAAATTTACTAAAATCAATTCCGGATAAGGGGATTAATGGAGATGATGCTGATCTATCAAAGAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAGGGGAGAAGTTTCTGGAGGTTTCTATGGGAATCTTGGCAAGATCTGACTCTTATAATATTGATTATAGCAGCTGTGGTGTCATTAGTACTTGGAATAAAAACAGAGGGCTTGGAAGAAGGGTGGTACGACGGGGGAAGCATTGCTTTCGCTGTTTTTCTTGTCATTATAGTTACAGCTGTCAGTGATTATCGGCAATCTTTGCAGTTTCAGAACTTAAATGCTGAGAAACAAAATATAAAATTGGAGGTCATTAGAGGTGGCAGAACAATACAAATATCGATATTTGATATTGTTGTTGGTGATTTAGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCCGATGGAGTTGTAATCACTGGTCACTCTCTTGCCATTGATGAATCGAGTATGACTGGTGAAAGCAAGATTATTCACAAGGACCAAAAAACACCTTTTTTGATGTCCGGTTGCAAAGTAGCAGATGGAATTGGTGCTATGCTGGTAACTGGTGTTGGTATAAATACTGAGTGGGGACTGCTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTTCGTTTGAATGGAGTAGCAACTTTTATTGGCATAGTTGGGCTTACTGTAGCTGTTTGTGTCCTTGCAGTCCTGTTGGGAAGATACTTCTCTGGCCATTCGAAAGATTTAGATGGAAAAGTACAATTTGTTGCTGGAGAGACTAGTATTAGCAAAGCAGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTGGTTGCAGTGCCCGAAGGTCTACCTTTAGCAGTTACCTTAACTTTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTGAGAAGGCTGTCCGCATGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACAGGAACTTTGACCTTAAATCAGATGACGGTAGTTGAGGCATGTGTTGGAAGGAAGAAACTAAATCCACCAGATGACTTGACAAAATTGCATCCCGAAGTTTCATCTCTGATAAATGAGGGCATTGCGCAAAATACAACTGGCAATATTTTTGTGCCTAAGGATGGTGGAGAGGCGGAGGTTTCAGGGTCTCCTACAGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAATTTTGATCTTATTAGATCAAATTCAACAATTCTCCACGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTCTTGCTCTGAAACTGCCGGACTCTGCAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAAAATGTACTCAATATCTTGATTCAGATGGTCACTTGAAATCTATTGAAGAAGAGAAGGTATTCTTCAAGAACGCTATCGAAGACATGGCTGCTCAGAGCTTGCGTTGTGTTGCCATTGCATACAGATCGTATGATTTAGACAAAATTCCATCTAATGAGGAGGAATTAGACCAGTGGTGCTTACCTGAACACGAGCTTGTCTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAGGATGCTGTGAAAGTATGCACTGAAGCTGGTGTTAAGGTACGGATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTAGAGTGTGGAATACTGATGTCAACTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTTCGTGAACTATCTGAAAAAGAAAGGGAACAAGTTGCGAAAAAGATAACAGTTATGGGGAGGTCTTCTCCTACTGACAAGCTGTTGATCGTGCAAGCACTACGTACAGGTGGTGAAGTTGTTGCCGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATAATCTTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATTCAGTTCCAACTCACTGTTAATGTTGCTGCTCTTGTAATAAATGTAGTGGCAGCAATATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCTCTTGCACTGGCTACGGAACCGCCAACAGACAACCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCCCTTATAACAAATGTCATGTGGAGGAACTTGATCGTACAGGCTCTCTATCAAGTCATCGTCCTTCTCGTTCTTAACTTCGGCGGTGAAAGTATTCTACGTAATAATCAGGATTCTATAGCCCATACCATACAAGTGAAGAATACTTTAATTTTCAATGCATTCGTCTTTTGTCAAATATTCAACGAGTTCAATGCTCGAAAACCAGAAGAGATGAATGTCTTCCGGGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAATGACCTTCGTGCTTCAGATAATCATCATCGAGTTCCTTGGAAAATTCACAACGACGGTGAAGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTTGTATTGGGCTTGTCAGCTGGCCTCTTGCGATAGTTGGAAAATTAATTCCAGTTCCCAAAACACCTCTGTCCCGATATTTCAGGAGATTGAGGAAGTCCAAGTCCCGTGCACCACCACCGTGCAATTCATAG 3312 0.43 MSSNVNMASTSRGSTSSSNGLLTVTIAGSSSSHSDDPTTNDSDNDEDELLVDPNDPFDITHTKNAPPESLKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRSHAQVIRAALLFRLAGERELVTSSAAVASPSPVGEYAVGLEQLVSMTKNQNISALQQYGGVKGLSNLLKSIPDKGINGDDADLSKRKNAFGTNTYPRKKGRSFWRFLWESWQDLTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNAEKQNIKLEVIRGGRTIQISIFDIVVGDLVPLKIGDQVPADGVVITGHSLAIDESSMTGESKIIHKDQKTPFLMSGCKVADGIGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVCVLAVLLGRYFSGHSKDLDGKVQFVAGETSISKAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGRKKLNPPDDLTKLHPEVSSLINEGIAQNTTGNIFVPKDGGEAEVSGSPTEKAILSWAVKLGMNFDLIRSNSTILHVFPFNSEKKRGGLALKLPDSAVHIHWKGAAEIVLGKCTQYLDSDGHLKSIEEEKVFFKNAIEDMAAQSLRCVAIAYRSYDLDKIPSNEEELDQWCLPEHELVLLAIVGIKDPCRPGVKDAVKVCTEAGVKVRMVTGDNLQTAKAIALECGILMSTEDAVEPNIIEGKTFRELSEKEREQVAKKITVMGRSSPTDKLLIVQALRTGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDNLMHRSPVGRREPLITNVMWRNLIVQALYQVIVLLVLNFGGESILRNNQDSIAHTIQVKNTLIFNAFVFCQIFNEFNARKPEEMNVFRGVTKNRLFMGIVGMTFVLQIIIIEFLGKFTTTVKLDWKLWLASLCIGLVSWPLAIVGKLIPVPKTPLSRYFRRLRKSKSRAPPPCNS* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3785 1103 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 780 894 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g3785 1103 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 443 532 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g3785 1103 Coils Coil 649 669 - -
Gso11g3785 1103 MobiDBLite consensus disorder prediction 1 37 - -
Gso11g3785 1103 Gene3D - 215 1067 - -
Gso11g3785 1103 Gene3D - 504 859 IPR023214 -
Gso11g3785 1103 SFLD p-type atpase 489 866 IPR044492 -
Gso11g3785 1103 ProSitePatterns E1-E2 ATPases phosphorylation site. 509 515 IPR018303 -
Gso11g3785 1103 Gene3D - 187 383 - -
Gso11g3785 1103 Pfam Cation transporter/ATPase, N-terminus 165 232 IPR004014 -
Gso11g3785 1103 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 514 711 IPR023299 GO:0000166
Gso11g3785 1103 SUPERFAMILY Calcium ATPase, transmembrane domain M 165 1078 IPR023298 -
Gso11g3785 1103 SMART Cation_ATPase_N_a_2 163 237 IPR004014 -
Gso11g3785 1103 SUPERFAMILY HAD-like 505 919 IPR036412 -
Gso11g3785 1103 CDD P-type_ATPase_Ca_PMCA-like 189 947 - -
Gso11g3785 1103 PANTHER CALCIUM-TRANSPORTING ATPASE 54 1093 - -
Gso11g3785 1103 PRINTS Sodium/potassium-transporting ATPase signature 250 270 - -
Gso11g3785 1103 PRINTS Sodium/potassium-transporting ATPase signature 500 521 - -
Gso11g3785 1103 PRINTS Sodium/potassium-transporting ATPase signature 626 644 - -
Gso11g3785 1103 Pfam haloacid dehalogenase-like hydrolase 504 828 - -
Gso11g3785 1103 SUPERFAMILY Calcium ATPase, transduction domain A 284 380 IPR008250 -
Gso11g3785 1103 SFLD Haloacid Dehalogenase 489 866 - -
Gso11g3785 1103 Pfam Cation transporting ATPase, C-terminus 899 1076 IPR006068 -
Gso11g3785 1103 Pfam E1-E2 ATPase 283 485 - -
Gso11g3785 1103 Gene3D - 517 714 IPR023299 GO:0000166
Gso11g3785 1103 MobiDBLite consensus disorder prediction 1 68 - -
Gso11g3785 1103 Gene3D - 67 119 - -
Gso11g3785 1103 Pfam Ca2+-ATPase N terminal autoinhibitory domain 54 97 IPR024750 GO:0005516
Gso11g3785 1103 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Gso11g3785 1103 PRINTS P-type cation-transporting ATPase superfamily signature 507 521 - -
Gso11g3785 1103 PRINTS P-type cation-transporting ATPase superfamily signature 707 718 - -
Gso11g3785 1103 PRINTS P-type cation-transporting ATPase superfamily signature 729 739 - -
Gso11g3785 1103 PRINTS P-type cation-transporting ATPase superfamily signature 814 833 - -
Gso11g3785 1103 PRINTS P-type cation-transporting ATPase superfamily signature 838 850 - -
Gso11g3785 1103 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 153 1078 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso11g3785 1103 PANTHER CATION TRANSPORTING ATPASE 54 1093 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3785 Gso-Chr11 53430893 53448871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3785 14 1095 Primary Pumps ATPases AT3G21180 75.716 0.0 1659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3785 K01537 - gmx:100817367 2065.43