Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3778 ATGAAGCTCACCGTGAAGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGGTAAGGTTTTGAAAGATGAAACTACTTTATCCGACAATAAGGTCTCTGAGGATGGTTTTCTTGTTGTCATGCTTAGTAAGGGTAAAACCTTGGGATCTGCTGGCATTTCATCAACTCAGTTTGCTAGCAACCCACCTACAACTGTATCAACACCAAATTCCACGCCTCTAGTTCAACCTCAATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAATGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAGTAATCTGGAGCAGACTATTCAGCAACTTATGGACATGGGTGGCGGCAGTTGGGACAGAGATACAGTTACTCGTGCTCTTCGAGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGTAGCAGCAGAAATTGCTGTGCCAGCTGCTTCTTACCCAATCAGTCAGACAACAGAAACAGGTGGGGCCTCTGTCGGAGCTGTTCCTGGGGTCCCTAATTCATCTCCCTTGAATATGTTTCCACAGGAAACAATTTCTGGTGCTGGAGCTGAAATTGGATCGCTTGACTTTCTTAGAAACAATCCCCAGTTTCAAGCATTACGCTCAATGGTGCAATCCAATCCGCAAATTCTGCAGCCTGTACTTCAGGAACTTGGAAAGCAGAATCCTAGTCTCTTAACACTAATTCAAGAGCATCATGCTGAATTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGGTGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGACGCCAGCAGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCAGTCATCGAGGCATTTTTGGCATGTGACCATGACGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGAGATTTTGAGGGTTAA 1104 0.4438 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLSDNKVSEDGFLVVMLSKGKTLGSAGISSTQFASNPPTTVSTPNSTPLVQPQSANNNASATDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTRALRAAYNNPERAVDYLYSGIPVAAEIAVPAASYPISQTTETGGASVGAVPGVPNSSPLNMFPQETISGAGAEIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDHDEQLAANYLLENAGDFEG* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3778 367 SUPERFAMILY UBA-like 141 191 IPR009060 GO:0005515
Gso11g3778 367 SMART uba_6 144 184 IPR015940 -
Gso11g3778 367 SMART uba_6 323 360 IPR015940 -
Gso11g3778 367 Gene3D - 314 362 - -
Gso11g3778 367 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gso11g3778 367 SMART CBM 240 283 IPR006636 -
Gso11g3778 367 SMART ubq_7 1 75 IPR000626 GO:0005515
Gso11g3778 367 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gso11g3778 367 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 366 - -
Gso11g3778 367 SUPERFAMILY UBA-like 302 364 IPR009060 GO:0005515
Gso11g3778 367 CDD UBA1_Rad23_plant 138 187 - -
Gso11g3778 367 SUPERFAMILY XPC-binding domain 241 305 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gso11g3778 367 Gene3D - 137 187 - -
Gso11g3778 367 TIGRFAM rad23: UV excision repair protein Rad23 1 366 IPR004806 GO:0006289
Gso11g3778 367 MobiDBLite consensus disorder prediction 86 117 - -
Gso11g3778 367 Pfam UBA/TS-N domain 144 182 IPR015940 -
Gso11g3778 367 Pfam UBA/TS-N domain 323 358 IPR015940 -
Gso11g3778 367 Gene3D - 1 77 - -
Gso11g3778 367 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 366 - -
Gso11g3778 367 Gene3D - 232 298 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gso11g3778 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 321 361 IPR015940 -
Gso11g3778 367 PRINTS DNA repair protein Rad23 signature 268 290 IPR004806 GO:0006289
Gso11g3778 367 PRINTS DNA repair protein Rad23 signature 317 333 IPR004806 GO:0006289
Gso11g3778 367 PRINTS DNA repair protein Rad23 signature 334 348 IPR004806 GO:0006289
Gso11g3778 367 PRINTS DNA repair protein Rad23 signature 349 364 IPR004806 GO:0006289
Gso11g3778 367 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Gso11g3778 367 CDD Ubl_Rad23 1 74 - -
Gso11g3778 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Gso11g3778 367 Pfam XPC-binding domain 242 297 IPR015360 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3778 Gso-Chr11 53365274 53370315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3778 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 9.96e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3778 K10839 - gmx:100804038 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0020 15 211074 213105 Gso11g3778 11 53365274 53370315 GST
Gso11g3778 11 53365274 53370315 Gso8g1865 8 18252231 18258212 PCT
Gso8g1865 8 18252231 18258212 Gso11g3778 11 53365274 53370315 PCT